media-libs/alembic needs sci-libs/hdf5[fortran]

[fordfrog]

[ 47%] Linking CXX executable AbcCoreHDF5_ArrayPropertyTests
cd /var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8_build/lib/Alembic/AbcCoreHDF5/Tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/AbcCoreHDF5_ArrayPropertyTests.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++   -march=native -Og -pipe -ggdb  -O3 -DNDEBUG   -Wl,-O1 -Wl,--as-needed CMakeFiles/AbcCoreHDF5_ArrayPropertyTests.dir/ArrayPropertyTests.cpp.o  -o AbcCoreHDF5_ArrayPropertyTests -rdynamic ../libAlembicAbcCoreHDF5.a ../../AbcCoreAbstract/libAlembicAbcCoreAbstract.a ../../Util/libAlembicUtil.a -lhdf5_hl -lhdf5_cpp -lhdf5_fortran -lhdf5 -lIex -lIexMath -lIlmThread -lImath -lHalf -lpthread -lz -lm 
/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lhdf5_fortran
collect2: error: ld returned 1 exit status
make[2]: *** [lib/Alembic/AbcCoreHDF5/Tests/CMakeFiles/AbcCoreHDF5_ArrayPropertyTests.dir/build.make:99: lib/Alembic/AbcCoreHDF5/Tests/AbcCoreHDF5_ArrayPropertyTests] Error 1
make[2]: Leaving directory '/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8_build'
make[1]: *** [CMakeFiles/Makefile2:1054: lib/Alembic/AbcCoreHDF5/Tests/CMakeFiles/AbcCoreHDF5_ArrayPropertyTests.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8_build'
make: *** [Makefile:139: all] Error 2

[brothermechanic]

Hello
Thank you, but this is wip.
Do you want to use it with blender?
Now i can't to install all deps follow this wiki
https://wiki.blender.org/index.php/User:Kevindietrich/AlembicBasicIo#Compiling_Alembic
Can you try to do that?

[fordfrog]

after i enabled fortran on hdf5, alembic compiled fine and blender-9999-r5 too. i did not check alembic support in blender but blender started fine.

[brothermechanic]

see https://wiki.blender.org/index.php/User:Kevindietrich/AlembicBasicIo#Compiling_Alembic

1. --enable-threadsafe in hdf5 config mean threads use flag, witch conflict with fortran
   i don't expert in this, witch one is needed
2. old alembic's ebuild have hard link to hdf5's fortran. I remove it (don't sure is it right way) Now alembic don't need hdf5's fortran

can you try this examples, please?
http://blenderartists.org/forum/showthread.php?399763-Dev-Win-Linux-build-Alembic-I-O&p=3059287&viewfull=1#post3059287
Do you have sussesfully import first example?

[fordfrog]

i cannot find the alembic import option in file -> import menu. should it be there or it's imported in a different way?

[brothermechanic]

This is because you compiled bledner's master branch.
I dont write alembic branch in blender's ebuild because it is in testing state.
I use 2 files in portage for it:

/etc/portage/package.env
media-gfx/blender blender

/etc/portage/env/blender
EGIT_BRANCH="alembic_basic_io"

Of cource ,you can write EGIT_BRANCH="alembic_basic_io" directly in blender's ebuild

Can you try recompile blender?

[fordfrog]

during the linking phase, i got many errors:

[100%] Linking CXX executable ../../bin/blender
cd /var/tmp/portage/media-gfx/blender-9999-r5/work/blender-9999_build/source/creator && /usr/bin/cmake -E cmake_link_script CMakeFiles/blender.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++    -Wredundant-decls -Wall -Wno-invalid-offsetof -Wno-sign-compare -Wlogical-op -Winit-self -Wmissing-include-dirs -Wno-div-by-zero -Wtype-limits -Werror=return-type -Werror=implicit-function-declaration -Wno-char-subscripts -Wno-unknown-pragmas -Wpointer-arith -Wunused-parameter -Wwrite-strings -Wundef -Wformat-signedness -Wuninitialized -Wundef -Wmissing-declarations -march=native -Og -pipe -ggdb -funsigned-char -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DWITH_OPENNL -DHAVE_STDBOOL_H  -fuse-ld=gold -fopenmp  -msse2  -msse -pipe -fPIC -funsigned-char -fno-strict-aliasing -O2 -DNDEBUG   -Wl,-O1 -Wl,--as-needed  CMakeFiles/blender.dir/creator.c.o CMakeFiles/blender.dir/creator_args.c.o CMakeFiles/blender.dir/creator_signals.c.o CMakeFiles/blender.dir/buildinfo.c.o  -o ../../bin/blender -rdynamic ../../lib/libbf_windowmanager.a ../../lib/libbf_editor_space_api.a ../../lib/libbf_editor_space_action.a ../../lib/libbf_editor_space_buttons.a ../../lib/libbf_editor_space_console.a ../../lib/libbf_editor_space_file.a ../../lib/libbf_editor_space_graph.a ../../lib/libbf_editor_space_image.a ../../lib/libbf_editor_space_info.a ../../lib/libbf_editor_space_logic.a ../../lib/libbf_editor_space_nla.a ../../lib/libbf_editor_space_node.a ../../lib/libbf_editor_space_outliner.a ../../lib/libbf_editor_space_script.a ../../lib/libbf_editor_space_sequencer.a ../../lib/libbf_editor_space_text.a ../../lib/libbf_editor_space_time.a ../../lib/libbf_editor_space_userpref.a ../../lib/libbf_editor_space_view3d.a ../../lib/libbf_editor_space_clip.a ../../lib/libbf_editor_transform.a ../../lib/libbf_editor_util.a ../../lib/libbf_editor_uvedit.a ../../lib/libbf_editor_curve.a ../../lib/libbf_editor_gpencil.a ../../lib/libbf_editor_interface.a ../../lib/libbf_editor_mesh.a ../../lib/libbf_editor_metaball.a ../../lib/libbf_editor_object.a ../../lib/libbf_editor_armature.a ../../lib/libbf_editor_physics.a ../../lib/libbf_editor_render.a ../../lib/libbf_editor_screen.a ../../lib/libbf_editor_sculpt_paint.a ../../lib/libbf_editor_sound.a ../../lib/libbf_editor_animation.a ../../lib/libbf_editor_datafiles.a ../../lib/libbf_editor_mask.a ../../lib/libbf_editor_io.a ../../lib/libbf_render.a ../../lib/libbf_python.a ../../lib/libbf_python_ext.a ../../lib/libbf_python_mathutils.a ../../lib/libbf_python_bmesh.a ../../lib/libbf_ikplugin.a ../../lib/libbf_modifiers.a ../../lib/libbf_bmesh.a ../../lib/libbf_gpu.a ../../lib/libbf_blenloader.a ../../lib/libbf_compositor.a ../../lib/libbf_blenkernel.a ../../lib/libbf_intern_rigidbody.a ../../lib/libbf_physics.a ../../lib/libbf_nodes.a ../../lib/libbf_rna.a ../../lib/libbf_imbuf.a ../../lib/libbf_blenlib.a ../../lib/libbf_depsgraph.a ../../lib/libbf_intern_ghost.a ../../lib/libbf_intern_string.a ../../lib/libbf_imbuf_openexr.a ../../lib/libbf_abc.a ../../lib/libbf_intern_elbeem.a ../../lib/libbf_intern_iksolver.a ../../lib/libbf_intern_memutil.a ../../lib/libbf_intern_guardedalloc.a ../../lib/libbf_intern_smoke.a ../../lib/libextern_curve_fit_nd.a ../../lib/libextern_bullet.a ../../lib/libbf_intern_moto.a ../../lib/libbf_dna.a ../../lib/libbf_blenfont.a ../../lib/libbf_blentranslation.a ../../lib/libbf_intern_audaspace.a ../../lib/libbf_intern_mikktspace.a ../../lib/libbf_intern_dualcon.a ../../lib/libbf_intern_opencolorio.a ../../lib/libbf_intern_eigen.a ../../lib/libextern_rangetree.a ../../lib/libextern_wcwidth.a ../../lib/libbf_intern_libmv.a ../../lib/libextern_glog.a ../../lib/libextern_gflags.a ../../lib/libbf_intern_glew_mx.a ../../lib/libextern_ceres.a ../../lib/libextern_binreloc.a ../../lib/libbf_intern_itasc.a ../../lib/libextern_carve.a ../../lib/libextern_xdnd.a ../../lib/libbf_intern_locale.a ../../lib/libbf_intern_decklink.a ../../lib/libbf_intern_opensubdiv.a -lpng -lz -lz -lfreetype -Xlinker -export-dynamic -lpython3.5m -llzo2 -lGLEW -lopenal -lfftw3 -ltiff -losdGPU -losdCPU -lboost_filesystem-mt -lboost_regex-mt -lboost_system-mt -lboost_thread-mt -lboost_date_time-mt -lboost_locale-mt -lboost_chrono-mt -lboost_atomic-mt -ljpeg -lHalf -lIex -lIlmImf -lIlmThread -lImath -lavformat -lavcodec -lavutil -lavdevice -lswscale -ljemalloc /usr/lib64/static/libAlembicAbc.a /usr/lib64/static/libAlembicAbcGeom.a /usr/lib64/static/libAlembicAbcCoreAbstract.a /usr/lib64/static/libAlembicUtil.a /usr/lib64/static/libAlembicAbcCoreHDF5.a /usr/lib64/static/libAlembicOgawa.a /usr/lib64/static/libAlembicAbcCoreOgawa.a /usr/lib64/static/libAlembicAbcMaterial.a /usr/lib64/static/libAlembicAbcCoreFactory.a -lhdf5 -lhdf5_hl ../../lib/libextern_clew.a ../../lib/libextern_cuew.a -lGLU -lGL -lX11 -lXi -lXxf86vm -lXrender -lutil -lc -lm -lpthread -ldl -ldl  
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/ArImpl.cpp:187: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveReader::~ArchiveReader()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/ArImpl.cpp:187: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveReader::~ArchiveReader()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/ArImpl.cpp:55: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveReader::~ArchiveReader()'
/usr/lib64/static/libAlembicAbcCoreHDF5.a(ArImpl.cpp.o):ArImpl.cpp:typeinfo for Alembic::AbcCoreHDF5::v7::ArImpl: error: undefined reference to 'typeinfo for Alembic::AbcCoreAbstract::v7::ArchiveReader'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/AwImpl.cpp:190: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveWriter::~ArchiveWriter()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/AwImpl.cpp:190: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveWriter::~ArchiveWriter()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/AwImpl.cpp:96: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::GetLibraryVersion[abi:cxx11]()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/AwImpl.cpp:56: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ArchiveWriter::~ArchiveWriter()'
/usr/lib64/static/libAlembicAbcCoreHDF5.a(AwImpl.cpp.o):AwImpl.cpp:typeinfo for Alembic::AbcCoreHDF5::v7::AwImpl: error: undefined reference to 'typeinfo for Alembic::AbcCoreAbstract::v7::ArchiveWriter'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/CacheImpl.cpp:50: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ReadArraySampleCache::~ReadArraySampleCache()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/CacheImpl.cpp:44: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ReadArraySampleCache::~ReadArraySampleCache()'
/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/include/g++-v5/tr1/shared_ptr.h:618: error: undefined reference to 'typeinfo for Alembic::AbcCoreAbstract::v7::ReadArraySampleCache'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/CacheImpl.cpp:50: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ReadArraySampleCache::~ReadArraySampleCache()'
/usr/lib64/static/libAlembicAbcCoreHDF5.a(CacheImpl.cpp.o):CacheImpl.cpp:typeinfo for Alembic::AbcCoreHDF5::v7::CacheImpl: error: undefined reference to 'typeinfo for Alembic::AbcCoreAbstract::v7::ReadArraySampleCache'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/OrImpl.cpp:83: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ObjectReader::~ObjectReader()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/OrImpl.cpp:74: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ObjectReader::~ObjectReader()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/OrImpl.cpp:55: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ObjectReader::~ObjectReader()'
/var/tmp/portage/media-libs/alembic-1.5.8-r5/work/alembic-1.5.8/lib/Alembic/AbcCoreHDF5/OrImpl.cpp:83: error: undefined reference to 'Alembic::AbcCoreAbstract::v7::ObjectReader::~ObjectReader()'
/usr/lib64/static/libAlembicAbcCoreHDF5.a(OrImpl.cpp.o):OrImpl.cpp:typeinfo for Alembic::AbcCoreHDF5::v7::OrImpl: error: undefined reference to 'typeinfo for Alembic::AbcCoreAbstract::v7::ObjectReader'
...

[fordfrog]

the path /var/tmp/portage/media-libs/alembic-1.5.8-r5/work/ seems weird there to me...

[brothermechanic]

works!