Check with static vignette

.Rbuildignore

@@ -2,3 +2,4 @@
 ^\.Rproj\.user$
 ^\.travis\.yml$
 ^cran-comments\.md$
+vignettes/summer-vignette.Rmd

.gitignore

@@ -2,4 +2,3 @@
 .Rhistory
 .RData
 .Ruserdata
-data/ZZBR62DT

DESCRIPTION

@@ -16,12 +16,12 @@ URL: https://github.com/bryandmartin/SUMMER
 BugReports: https://github.com/bryandmartin/SUMMER/issues
 Depends: R (>= 3.2)
 License: GPL (>= 2)
-Imports: RColorBrewer, classInt, rgeos, maptools, survey, grDevices, graphics, stats, spdep, survival, ggplot2, sp, utils, Matrix, reshape2
+Imports: RColorBrewer, classInt, rgeos, maptools, survey, grDevices, graphics, stats, spdep, survival, ggplot2, sp, utils, Matrix, reshape2, pixmap
 Encoding: UTF-8
 LazyData: true
 RoxygenNote: 6.0.1
 Additional_repositories: https://www.math.ntnu.no/inla/R/stable
-Suggests: INLA, knitr, rmarkdown, readstata13, gridExtra
-VignetteBuilder: knitr
+Suggests: INLA, knitr, rmarkdown, readstata13, gridExtra, R.rsp
+VignetteBuilder: R.rsp
 NeedsCompilation: no
 Packaged: 2017-11-10 21:35:54 UTC; Bryan

cran-comments.md

@@ -3,62 +3,6 @@
 * ubuntu 12.04 (on travis-ci), R 3.4.2
 * win-builder (devel and release)
 
-## R CMD check results
-There were no ERRORs or WARNINGs. There were 3 NOTEs:
-
-* Maintainer: ‘Bryan D Martin <bmartin6@uw.edu>’
-
-  New submission
-
-  Suggests or Enhances not in mainstream repositories:
-    INLA 
-  Availability using Additional_repositories specification:
-    INLA   yes   https://www.math.ntnu.no/inla/R/stable
-
-**Response:** The first part does not seem to be an issue. For the latter, the INLA repository is included in Additional_repositories.
-
-* Files ‘README.md’ or ‘NEWS.md’ cannot be checked without ‘pandoc’ being installed.
-
-**Response:** I can remove this NOTE by adding README.md file to .Rbuildignore, but I don't think I should do this.
-
-* Possibly mis-spelled words in DESCRIPTION:
-  Spatio (3:8)
-  spatio (9:63)
-
-**Response:** The word spatio is not misspelled. It is part of the hyphenated word spatio-temporal.
-
-## Round 1 Response
-
-* Thanks, please omit the redundant 'in R' in your title.
-
-**Response:** Done.
-
-* Please add a reference for this method in the 'Description' field of your DESCRIPTION file in the form
-  authors (year) <doi:...>
-  authors (year) <arXiv:...>
-  authors (year, ISBN:...)
-  with no space after 'doi:', 'arXiv:' and angle brackets for auto-linking.
-
-**Response:** The citation has been added. This added 1 NOTE:
-checking DESCRIPTION meta-information ... NOTE
-Malformed Description field: should contain one or more complete sentences.
-
-This is due to the "." from "Mercer et al.". All sentences are complete.
-
-* Please add more small executable examples in your Rd-files.
-
-**Response:** All exported functions now include examples.
-
-## Round 2 Response
-
-* Thanks, but descriptions longer than one line should start with a space or tab. Otherwise a new description line is identified as a new DESCRIPTION field.
-
-**Response:** Thanks for pointing this out. It has been fixed.
-
-* Please also omit the blank in <doi: 10.1214/15-AOAS872>.
-
-**Response:** We have searched for this blank in all files by checking every occurrence of "doi", and it does not occur. Just in case, we have manually re-typed  "doi:1" in each occurence of the reference.
-
 ## Version 0.2.0 Update
 
 * We expanded authorship of the package.
@@ -69,4 +13,4 @@ This is due to the "." from "Mercer et al.". All sentences are complete.
 * We renamed our included data, added another data set, and clarified that the data do not represent any real country.
 * We added the capability to do a simpler model that uses only binary outcome.
 * We made minor updates to the documentation and examples.
-
+* Switch to a static vignette with source code available.