GSL error.

[ldutoit]

Hi Bradley,

thank you for your fantastic tool.

I am getting errors when running run_bgc.sh, and I have no idea where to look for the problem:

After:
Initializing MCMC chain
gsl: ../gsl/gsl_vector_int.h:182: ERROR: index out of range

I attached my input files and I'd be most grateful for any pointers.

Kind regards

Ludo

bgc_p1in.txt
bgc_p0in.txt
bgc_loci.txt
bgc_admixedin.txt
bgc_settings.txt

[btmartin721]

Hi Ludo,

That sounds like maybe a versioning issue with GSL. What version of GSL are you using? Also, are you running this on a high-performance computing node? If so, are there any other GSL versions that you can load with a pre-built module?

[btmartin721]

Actually I take that back. It looks to me like your input files aren't formatted correctly. The bgc_p1in.txt and bgc_p2in.txt files just contain the locus names, but they have what is currently in your loci.txt file, and vice versa. Also, I think there is only one population (pop0) present in the data, whereas there should be discrete populations defined in p1in.txt, p2in.txt, and admixedin.txt.