Welcome! This is CytoCluster, a package for clustering high-dimensional cytometry data in Python. CytoCluster started as a module in the first release of CytoPy.
CytoCluster is now a standalone package that provides functions and classes for:
- Popular clustering algorithms such as FlowSOM, Phenograph, SPADE etc.
- Plotting and visualising clustering results.
- Ensemble clustering for combining the results of many clustering algorithms into consensus clusters.
Examples of using the CytoCluster package are provided in the example notebooks (see notebooks folder in this repo).
pip install cytocluster
The CytoPy ecosystem is under development, see ### for details on release information.