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smrtanalysis htseq

GenPipes 2.3.0 Release Notes

A new release of GenPipes version 2.3.0 is now available.

What's new?

New Tumor Pair pipeline : a sensitive ensemble approach for detection of somatic and germline variants
Added an optional step to our PacBio Assembly pipeline to circularize the assembly contigs using the circlator python package
Bug fixes
- One of these bugs, in our RNA-Seq pipeline, was causing the reverse strand bed graph to always be empty
Some modules were added or were updated
New genomes were installed :
- Bos_taurus.UMD3.1
- Macaca_mulatta.MMUL_1
- Pan_troglodytes.CHIMP2.1.4
- Pan_troglodytes.panTro4
- Papio_anubis.PapAnu2.0

Quick! Where can I find it? I can't wait!

This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/mugqic_pipelines-2.3.0.tar.gz

Compute Canada Servers abacus, guillimin and mammouth clusters are updated with this new release.

The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master