Merge pull request #391 from bento-platform/drs-err-logging

DRS fetch error logging

chord_metadata_service/chord/ingest/utils.py

@@ -13,6 +13,7 @@
 
 from typing import Any, Callable
 
+from chord_metadata_service.logger import logger
 from .exceptions import IngestError
 
 __all__ = [
@@ -58,7 +59,9 @@ def workflow_http_download(tmp_dir: str, http_uri: str) -> str:
     r = requests.get(http_uri)
 
     if not r.ok:
-        raise IngestError(f"HTTP error encountered while downloading ingestion URI: {http_uri}")
+        err = f"HTTP error encountered while downloading ingestion URI: {http_uri}"
+        logger.error(f"{err} (Status: {r.status_code}; Contents: {r.content.decode('utf-8')})")
+        raise IngestError(err)
 
     data_path = f"{tmp_dir}ingest_download_data"
 

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "chord_metadata_service"  # can be renamed to katsu if inner module directory is renamed too
-version = "2.18.1"
+version = "2.18.2"
 description = "An implementation of a clin/pheno metadata store for the Bento platform."
 authors = [
     "Ksenia Zaytseva",
@@ -34,7 +34,7 @@ classifiers = [
 
 [tool.poetry.dependencies]
 python = "^3.8.1"
-bento-lib = {version = "6.0.0", extras = ["django"]}
+bento-lib = {extras = ["django"], version = "^6.0.1"}
 Django = "^4.1.7"
 django-autocomplete-light = "^3.9.4"
 django-cors-headers = "^3.13.0"