Merge pull request #133 from c3g/autogen-exp-id

Autogenerate experiment ID upon ingestion if needed
bento-platform · Jun 5, 2020 · c1fa080 · c1fa080
2 parents cc79991 + 3b3e166
commit c1fa080
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diff --git a/chord_metadata_service/chord/ingest.py b/chord_metadata_service/chord/ingest.py
@@ -111,7 +111,7 @@ def ingest_resource(resource: dict) -> rm.Resource:
 def ingest_experiment(experiment_data, table_id) -> em.Experiment:
     """Ingests a single experiment."""
 
-    new_experiment_id = experiment_data["id"]    # TODO: Is this provided?
+    new_experiment_id = experiment_data.get("id", str(uuid.uuid4()))
 
     reference_registry_id = experiment_data.get("reference_registry_id")
     qc_flags = experiment_data.get("qc_flags", [])

diff --git a/requirements.txt b/requirements.txt
@@ -4,7 +4,7 @@ Babel==2.8.0
 certifi==2020.4.5.1
 chardet==3.0.4
 chord-lib==0.9.0
-codecov==2.1.3
+codecov==2.1.4
 colorama==0.4.3
 coreapi==2.3.3
 coreschema==0.0.4