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IBD200_songbird_metadata_20210420.txt
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IBD200_songbird_metadata_20210420.txt
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sample-id Split-Group StudyGroup Diagnosis ActiveLocation SESCDScore SES-group Ulcer-group Mayo UCEIS Patient-ID ID-and-Diagnosis identifier Proteome-ID tube-id Metabolomics-FileName Metabolomics-FileName-Run1 Blood Metabolomics-Plate Metabolomics-WellID primer-date primer-plate processing-robot project-name shotgun16sID host-age Age-at-Dx Disease-duration sex Race Smoking host-weight-kg host-height-cm BMI Prior-Hospitalizations Number-of-surgeries Current-Biologic-Type-IFX1-ADA2-GOL3-VDZ4-SIM5-UST6-TOF7 Current-IM-Type-1AZA-26MP-3MTX Current-Steroids Steroid-exposure AZA_redux AZA ASA_redux ASA Biologic_redux Biologic-Therapy Steroids_redux STEROIDS Other-NonBiologic-Therapy Age-at-dx-A1-0-16-A2-17-39-A3-40plus) Historic-behavior Historical-Disease-Extent Historic-location Perianal-Disease Prior-bowel-resection Ileocecal-valve-resected Number-of-intestinal-resections Short-bowel-syndrome Prior-TNFi-use Number-of-prior-TNFi-agents Prior-VDZ-use Prior-UST-use Current-biologic-1-Vedolizumab-2infliximab-3adalimumab-4certolizumab-5golimumab-6ustekinumab-7tofacitinib Current-IMM-use Final-Metabolomics-Weight Original-Metabolomics-Weight Location plating extraction-robot CRP-value Alb-g-per-dL WBC-1000-mm3 MCV-um3 PLT-1000-mm3 CDAI Relative-Activity Relative-Activity-Index Most-abundant-level7-16S faith-pd pielou-e low-evenness Activity-level shannon observed-otus PGA Stools-Before-Dx Inflamed-Tissue Behavior Ileum-Examined-Accessed-Resected-or-Inaccessible Left-Colon-Examined-Accessed-Resected-or-Inaccessible Rectum-Examined-Accessed-Resected-or-Inaccessible Right-Colon-Examined-Accessed-Resected-or-Inaccessible Transverse-Examined-Accessed-Resected-or-Inaccessible Lymph-prcntg Partial-Mayo Exam-type Original-SES-CD-Score Ileum-Extent-Ulcerated-SA TC-Extent-Ulcerated-SA LC-Extent-Ulcerated-SA RC-Extent-Ulcerated-SA Rectum-Extent-Ulcerated-SA Extent-of-ulcerated-surface-Sub-Total Ulcerated-surface-extent Ileum-Extent-Affected-SA TC-Extent-affected-SA lc-Extent-affected-SA RC-Extent-affected-SA Rectum-Extent-affected-SA Extent-of-affected-surface-Sub-Score ExtentAffectedSurface Ileum-Ulcer-size TC-ulcer-size LC-ulcer-size RC-ulcer-size Rectum-ulcer-size Presence-and-Size-of-Ulcers-SES-CD-Sub-Total Illeal-Ulcer-burden Colonic-ulcer-burden Ileum-Narrowings TC-Narrowings LC-Narrowings RC-Narrowings Rectum-Narrowings Presence-and-type-of-narrowings-Sub-score CURRENT-BEHAVIOR-narrowings CURRENT-illeal-score CURRENT-TC-score CURRENT-LC-score CURRENT-RC-score CURRENT-RECTUM-score Historic-Extent-for-UC-patients Pouch-UC Antidepressant?-(yes/no-at-time-of-endoscopy) 5-ASA-exposure Current-5-ASA IM-Exposure "Type-Biologic-Exposure-(IFX=1,-ADA=2,-GOL=3,-VDZ=4,-SIM=5,-UST=6,-TOF=7)" Current-Biologic Stool-Frequency Rectal-Bleeding
#q2:types categorical categorical categorical categorical numeric categorical categorical numeric numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric numeric numeric categorical categorical categorical numeric numeric numeric categorical numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical categorical numeric categorical categorical numeric categorical categorical Categorical Categorical numeric numeric categorical categorical categorical numeric numeric numeric numeric numeric numeric numeric numeric categorical numeric numeric categorical categorical numeric numeric numeric categorical categorical categorical categorical categorical categorical categorical categorical numeric numeric categorical numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric numeric categorical numeric numeric numeric numeric numeric numeric categorical categorical categorical categorical categorical categorical categorical categorical categorical
CD101 Train IBD CD colonic 1 inactive rem_mild 150675-80 CD_FIT055E3CAL FIT055E3CAL 101 FIT055E3CAL FIT055E3CAL_BA6_01_51854.mzXML FIT055E3CAL_BA6_01_50102.mzXML PLCL26266 Plate1 A6 42019 2 Echo550 IBD200 12675.FIT055E3CAL 27 16 8 female African American N 165.1 66.94 N 0 unk unk yes IFX unk dose Q8wks (2008-2010) unk A1 NonSNonP ileocolonic No No No 0 No Yes 1 No No 0 none 0.1563 0.1563 Ileocolonic SF Carmen_HOWE_KF3 48.1 7.3 79.3 379 5.43 0.149052978 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 13.44932552 0.613924458 no Low 4.376841211 140 unk Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 36 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 1
CD134 Train IBD CD colonic 3 mild rem_mild 150675-108 CD_FIT286E3CAL FIT286E3CAL 134 FIT286E3CAL FIT286E3CAL_GF2_01_52063.mzXML FIT286E3CAL_GF2_01_50253.mzXML PLCL32539 Plate2 F2 42019 3 Echo550 IBD200 12675.FIT286E3CAL 41 female Caucasian N unk unk unk unk A2 NonSNonP ileocolonic Yes Yes Yes 1 No Yes 2 Yes No 6 none 0.1543 0.1543 Perianal HG Carmen_HOWE_KF4 42914 4.1 5.3 87.1 284 16 0.439198463 0.4 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 9.196422853 0.611910296 no Moderate 4.100068053 104 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 no 0 0 0 0 3
CD118 Train IBD CD colonic 3 mild rem_mild 150675-14 CD_FIT004E3CAL FIT004E3CAL 118 FIT004E3CAL FIT004E3CAL_BF3_01_51918.mzXML FIT004E3CAL_BF3_01_50170.mzXML PLCL24720 Plate1 F3 42019 2 Echo550 IBD200 12675.FIT004E3CAL 55 25 27 male African American N 165.1 17.27 N 1 unk yes unk (1/1998) yes ADA 160 mg (unk) yes Pred unk (1/1989) A2 NonSNonP colonic No Yes Yes 1 No No 0 No No 3 AZA 0.1214 0.1214 Colonic SF Carmen_HOWE_KF3 4.663964256 3.3 8.8 74.4 401 9 0.247049135 0.2 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 6.232778758 0.320719643 yes Low 1.706846881 40 1 Non-S/Non-P Inaccessible Accessed Accessed Accessed Accessed 16 CS 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 yes 0 0 0 3 0
CD17 Train IBD CD colonic 3 mild rem_mild 150675-182 CD_FIT120E3CAL FIT120E3CAL 17 FIT120E3CAL FIT120E3CAL_BC9_01_52130.mzXML FIT120E3CAL_BC9_01_50327.mzXML PLCL29767 Plate3 C9 42019 1 Echo550 IBD200 12675.FIT120E3CAL 40 23 17 male Caucasian F 180.3 20.92 Y 1 yes unk dose PO (8/2010; d/c not tolerated) yes Pentasa unk dose PO (2005) yes IFX unk IV (2011-2012) yes Pred unk dose PO (2000) A2 S ileocolonic Yes Yes Yes 1 No Yes 1 No No 3 none 0.116 0.175 Ileocolonic HG Carmen_HOWE_KF2 2.8 0 0 0 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 12.52730388 0.645018129 no Low 4.585127146 138 1 "Stricturing, perianal " Inaccessible Accessed Accessed Accessed Accessed CS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 yes 0 0 0 3 0
CD185 Train IBD CD colonic 3 mild rem_mild 150675-3 CD_FIT010CCAL FIT010CCAL 185 FIT010CCAL FIT010CCAL_BD11_01_51901.mzXML FIT010CCAL_BD11_01_50149.mzXML PLCL24721 Plate1 D11 42019 2 Echo550 IBD200 12675.FIT010CCAL 35 21 11 male Caucasian N 63.95 186 18.25 N 0 yes 50 mg (3/2006-6/2006) yes 3 g (1/2005) yes ADA 40 mg Q2wk (2/2016) yes Budesonide 9 mg (7/2005-1/2006) A2 P ileal Yes No No 0 No No 0 No No 0 AZA 0.146 0.146 Ileal SF Carmen_HOWE_KF3 1.908452009 4.8 7.9 78.8 245 2.86 0.078506725 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 10.99997333 0.612003005 no Low 4.337548558 136 1 to 2 "Stricturing, penetrating, perianal" Inaccessible Accessed Accessed Accessed Accessed 9 CS 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 yes 0 0 0 3 0
CD11 Test IBD CD colonic 3 mild rem_mild 150675-312 CD_FIT284E3CAL FIT284E3CAL 11 FIT284E3CAL FIT284E3CAL_BA5_01_52100.mzXML FIT284E3CAL_BA5_01_50295.mzXML PLCL32124 Plate3 A5 42019 1 Echo550 IBD200 12675.FIT284E3CAL 23 10 12 male Caucasian N 182.9 20.76 Y 0 unk unk yes IFX IV 2010-2014; lost response unk A1 NonSNonP ileocolonic No No No 0 No Yes 2 No No 1 none 0.0891 0.0891 Ileocolonic HG Carmen_HOWE_KF2 4.7 4 10.2 78.4 455 7.85 0.215481746 0.2 6.543644772 0.320796985 yes Low 1.683519322 38 2 Non-s/non-p Inaccessible Accessed Accessed Accessed Accessed 24 ICS 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 yes 0 0 0 3 0
CD55 Test IBD CD colonic 4 mild rem_mild 150675-35 CD_FIT023E3CAL FIT023E3CAL 55 FIT023E3CAL not applicable FIT023E3CAL_BE8_01_50161.mzXML PLCL21094 not applicable not applicable 42019 2 Echo550 IBD200 12675.FIT023E3CAL 3 65 4 female Caucasian N 157.5 20.97 N 0 unk yes 1.2 g (unk-3/2012) unk unk Namenda (6/2010) A3 NonSNonP ileocolonic No No No 0 No No 0 No No 1 none 0.1288 0.1288 Ileocolonic SF Carmen_HOWE_KF3 0.53906156 4.7 85.5 159 10.85 0.297831458 0.3 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 13.50611573 0.495684667 no Moderate 3.638251101 162 43832 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 44 4 0 0 0 0 0 0 0 0 0 1 0 3 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 1 0 3
CD98 Test IBD CD colonic 4 mild rem_mild 150675-93 CD_FIT070E3CAL FIT070E3CAL 98 FIT070E3CAL FIT070E3CAL_BA11_01_51859.mzXML FIT070E3CAL_BA11_01_50107.mzXML PLCL26258 Plate1 A11 42019 2 Echo550 IBD200 12675.FIT070E3CAL 40 12 25 female Caucasian N 181.6 23.87 Y 0 yes unk dose PO (1998-unk; dose changed several times) yes Asacol unk PO (1991-1998) unk yes Pred unk dose PO (1998) Balsalazide unk dose PO (1998-unk) A1 NonSNonP unk colonic No No No 0 No No 0 No No 0 AZA 0.101 0.101 Colonic SF Carmen_HOWE_KF3 2.845367105 4.4 4.2 100.8 402 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__ 18.3901335 0.725155774 no not applicable 5.872334719 274 0 to 1 RC Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 29 4 0 0 0 2 0 2 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 0 no 0 0 0 4 0
CD86 Train IBD CD colonic 5 mild mod_sev 150675-135 CD_FIT087E3CAL FIT087E3CAL 86 FIT087E3CAL FIT087E3CAL_GA2_01_51997.mzXML FIT087E3CAL_GA2_01_50179.mzXML PLCL26248 Plate2 A2 42019 2 Echo550 IBD200 12675.FIT087E3CAL 31 26 36 female Caucasian N 160 30.53 Y 0 unk yes Mesalamine unk PO QD (2006-unk) yes ADA 40 mg SQ (2006-unk) yes Pred unk dose PO QD (2006-unk) A2 NonSNonP colonic No No No 0 No Yes 3 No No 1 MTX 0.1381 0.1381 Ileal SF Carmen_HOWE_KF3 19.62176754 4.4 5.8 89.5 316 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 7.133902467 0.259086952 yes 1.566023648 66 1 to 2 Il stricturing Accessed Accessed Accessed Accessed Accessed 35 5 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 2 1 0 4 0 0 0 0 0 0 no 0 0 0 0 5
CD37 Test IBD CD colonic 5 mild mod_sev 150675-339 CD_150675-339 150675.339 37 150675-339 150675-339_BA4_01_52099.mzXML 150675-339_BA4_01_50294.mzXML PLCL32760 Plate3 C2 42019 1 Echo550 IBD200 12675.150675.339 64 43 20 male Caucasian N 172.7 29.27 N 0 unk yes Po 1998 ineffective yes IFX IV 2006-2016 yes Pred (1998-2006) steroid-dependent A3 NonSNonP unk colonic No No No 0 No Yes 1 Yes No 0 none 0.0401 0.1218 HG Carmen_HOWE_KF2 2.86 0.078506725 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 18.34626772 0.672316022 no Low 5.303728478 237 2 R N/a Accessed Accessed Accessed Accessed Accessed ICS 5 0 1 0 0 0 1 0 0 1 0 0 1 2 1 0 2 0 0 0 2 0 2 0 0 0 0 0 0 no 0 4 0 0 1
CD48 Train IBD CD colonic 6 mild rem_mild 150675-333 CD_150675-333 150675.333 48 150675-333 150675_333_BF11_01_52173.mzXML 150675_333_BF11_01_50372.mzXML PLCL33148 Plate3 C1 42019 1 Echo550 IBD200 12675.150675.333 20 17 2 female Hispanic or Latino N 154.5 22.42 Y 0 unk unk yes IFX 5mg/kg IV 03/2016-05/2017 secondary loss of response yes Pred Po 03/2016 A2 NonSNonP colonic No No No 0 No Yes 2 No No 6 none 0.0759 0.1128 Colonic HG Carmen_HOWE_KF2 1 6.86 0.188306341 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 12.55550389 0.675764882 no Low 4.715000747 126 15 rc-r Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 6 0 0 0 1 1 2 1 0 0 0 1 1 2 1 0 0 0 1 1 2 0 2 0 0 0 0 0 0 no 0 0 0 3 3
CD112 Train IBD CD colonic 7 moderate mod_sev 150675-96 CD_FIT094E3CAL FIT094E3CAL 112 FIT094E3CAL FIT094E3CAL_BA4_01_51852.mzXML FIT094E3CAL_BA4_01_50100.mzXML PLCL26237 Plate1 A4 42019 1 Echo550 IBD200 12675.FIT094E3CAL 49 37 10 female Caucasian F 170.2 25.37 Y 0 unk yes Apriso 1.5 g PO QD (2011-pres) yes Cimzia 400 mg Q4wks (2009-pres) unk Sulfasalazine unk dose (2007-2009) A2 NonSNonP Unk ileal No No No 0 No Yes 1 No No 3 none 0.1022 0.1022 Ileal HG Carmen_HOWE_KF2 13.9 4.2 6.6 92.5 311 0 0 0 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 8.086681415 0.546351487 no Low 3.492452132 84 2 Non-S/Non-P Inaccessible Accessed Accessed Inaccessible Accessed 39 7 1 0 0 1 0 1 0 0 1 0 2 0 0 2 2 3 0 0 3 yes 0 7 0 0 0
CD143 Train IBD CD colonic 9 moderate mod_sev 150675-130 CD_FIT165E3CAL FIT165E3CAL 143 FIT165E3CAL FIT165E3CAL_GB9_01_52017.mzXML FIT165E3CAL_GB9_01_50203.mzXML PLCL29773 Plate2 B9 42019 2 Echo550 IBD200 12675.FIT165E3CAL 42 10 29 female Caucasian N 152.4 22.67 Y 1 yes unk dose (2003-unk; developed pancreatitis) unk yes ADA unk dose SQ (2003) yes Pred 17 mg PO QD (unk) Cimzia unk dose (2014-12/2015; d/c for pregnancy) A1 NonSNonP colonic Yes Yes Yes 1 No Yes 2 No No 3 none 0.1198 0.1198 Colonic SF Carmen_HOWE_KF3 21.71 0.595937414 0.6 k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__ 6.375461121 0.374529097 yes High 2.145272876 53 0 to 1 R-cuff Perianal Accessed Resected Accessed Resected Resected P 9 0 2 2 1 0 3 3 1 0 3 3 0 6 0 1 1 yes 0 0 0 0 9
CD108 Train IBD CD colonic 9 moderate rem_mild 150675-45 CD_FIT071E3CAL FIT071E3CAL 108 FIT071E3CAL FIT071E3CAL_GA3_01_51998.mzXML FIT071E3CAL_GA3_01_50180.mzXML PLCL26250 Plate2 A3 42019 2 Echo550 IBD200 12675.FIT071E3CAL 27 17 6 male Middle Eastern N 66.6 176.5 18.81 Y 0 yes 125 mg (6/2016-pres) yes unk (2009) yes IFX 5 mg/kg Q8W (2010-2013) yes Pred unk (2009) Budesonide (2/2016-ineff.) A2 P ileocolonic Yes No No 0 No Yes 2 No No 6 AZA 0.1017 0.1017 Ileocolonic SF Carmen_HOWE_KF3 4.3 5.9 85.5 304 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.258634736 0.367324644 yes not applicable 2.142564249 57 1 RC-LC-R "Perianal,penetrating" Inaccessible Accessed Accessed Accessed Accessed 27 ICS 7 0 0 0 0 0 0 3 0 3 0 6 1 0 0 0 0 1 0 0 0 3 0 3 yes 0 3 0 6 0
CD19 Train IBD CD colonic 12 moderate mod_sev 150675-206 CD_FIT201E3CAL FIT201E3CAL 19 FIT201E3CAL FIT201E3CAL_BF4_01_52166.mzXML FIT201E3CAL_BF4_01_50365.mzXML PLCL21224 Plate3 F4 42019 1 Echo550 IBD200 12675.FIT201E3CAL 28 8 18 male Asian N 157.5 19.97 Y 0 yes unk dose 2003- (2009-2013) yes Asacol 1999 yes IFX 2003 yes Pred 1999 A1 P colonic Yes No No 0 No Yes 1 No No 3 none 0.1495 0.1476 Colonic HG Carmen_HOWE_KF2 44.6 11.71 0.321438375 0.3 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 6.204618448 0.566758566 no Moderate 3.530236348 75 1 severe-rectal-strictures Penetrating Inaccessible Accessed Accessed Inaccessible Inaccessible 11 3 3 1 3 4 1 3 3 9 3 3 yes 0 0 0 0 12
CD70 Test IBD CD colonic 12 moderate rem_mild 150675-82 CD_FIT031E3CAL FIT031E3CAL 70 FIT031E3CAL FIT031E3CAL_BB8_01_51870.mzXML FIT031E3CAL_BB8_01_50118.mzXML PLCL26254 Plate1 B8 42019 2 Echo550 IBD200 12675.FIT031E3CAL 62 59 0 male Caucasian N 74.4 185.4 24.46 Y 1 unk yes 4.8 g PO (6/2016-pres) yes Ustekinumab 90 mg SQ 12/2016 yes Pred 40 mg PO QD (6/2016-pres) A3 NonSNonP colonic No Yes No 1 No No 0 No No 0 none 0.1641 0.1641 Colonic SF Carmen_HOWE_KF3 1.3 3.5 53.1 88.7 344 7.71 0.211638759 0.2 k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__alactolyticus 9.820618457 0.122993533 yes Low 0.796473332 89 1 LC--R Non-s/non-p Inaccessible Accessed Accessed Inaccessible Inaccessible 12 3 2 5 1 3 2 5 1 1 1 2 5 0 0 0 no 0 0 7 0 5
CD194 Train IBD CD colonic 15 moderate mod_sev 150675-229 CD_FIT187E3CAL FIT187E3CAL 194 FIT187E3CAL FIT187E3CAL_BA11_01_52106.mzXML FIT187E3CAL_BA11_01_50301.mzXML PLCL28496 Plate3 A11 42019 1 Echo550 IBD200 12675.FIT187E3CAL 21 7 11 female Caucasian N 62.2 172.7 20.83 N 1 yes 125 mg PO 7/24/2017-pres unk yes IFX 10 mg/kg IV 2010-2014 d/c high antibody yes Pred po 2006-2008 Sulfasalazine unk 2006-2008 A1 P colonic Yes Yes No 1 No Yes 2 No No 6 AZA 0.0888 0.1316 Colonic HG Carmen_HOWE_KF2 17.6 3.8 7.1 87.7 345 14 0.384298655 0.4 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 16.21383116 0.548650087 no Moderate 4.161490333 192 0 to 1 LC S/p/p Accessed Accessed Accessed Accessed Accessed 10 15 0 0 2 1 1 4 1 0 0 2 1 1 4 1 0 0 3 1 3 7 0 10 0 0 0 0 0 0 no 0 0 7 3 5
CD16 Train IBD CD colonic 18 severe mod_sev 150675-135 CD_FIT150E3CAL FIT150E3CAL 16 FIT150E3CAL FIT150E3CAL_GB5_01_52013.mzXML FIT150E3CAL_GB5_01_50199.mzXML PLCL21229 Plate2 B5 42019 2 Echo550 IBD200 12675.FIT150E3CAL 65 female Caucasian 30.53 unk unk unk unk A2 NonSNonP colonic No No No 0 No Yes 3 No No 1 MTX 0.1063 0.1063 Colonic SF Carmen_HOWE_KF3 42689 3.7 7 84.7 298 11 0.301948943 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 13.39278009 0.759258221 no Moderate 5.586281846 164 3 3 6 1 3 3 3 1 3 3 6 0 0 0 no 0 0 9 0 9
CD52 Train IBD CD colonic 18 severe mod_sev 150675-175 CD_FIT124E3CAL FIT124E3CAL 52 FIT124E3CAL FIT124E3CAL_GD10_01_52044.mzXML FIT124E3CAL_GD10_01_50232.mzXML PLCL27380 Plate2 D10 42019 2 Echo550 IBD200 12675.FIT124E3CAL 50 47 0 female Caucasian N 175.3 19.32 N 0 unk unk unk yes Pred tap 20 mg (12/2016 - unk) A3 NonSNonP colonic Yes No No 0 No No 0 No No 0 none 0.146 0.146 Colonic SF Carmen_HOWE_KF3 43.5 3.8 11.5 83.5 446 19.71 0.541037606 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ no Moderate 1 RC--LC--R Perianal Accessed Accessed Accessed Accessed Accessed 14 18 0 1 1 1 1 4 1 0 1 2 1 3 7 1 0 1 1 2 3 7 0 7 0 0 0 0 0 0 no 0 3 4 4 7
CD96 Test IBD CD colonic 19 severe mod_sev 150675-321 CD_FIT293E3CAL FIT293E3CAL 96 FIT293E3CAL FIT293E3CAL_GF3_01_52064.mzXML FIT293E3CAL_GF3_01_50254.mzXML PLCL31904 Plate2 F3 42019 3 Echo550 IBD200 12675.FIT293E3CAL 30 12 15 female Caucasian N 154.9 22.11 Y 0 yes 75 mg PO 4/2018 yes Asacol yes IFX 5 mg/kg IV 2016 yes Pred 2002 PRN annually Solumedrol IV 5/2017; hospitalization A1 NonSNonP Pancolites colonic No No No 0 No Yes 1 No No 3 AZA 0.1477 0.1477 HG Carmen_HOWE_KF4 15.86 0.435355476 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 10.21612958 0.557522197 no Moderate 3.696013468 99 0 to 1 LC--R Accessed Accessed Accessed Accessed Accessed ICS 19 0 0 3 1 1 5 1 0 0 3 1 1 5 1 0 0 3 2 2 5 0 13 0 0 2 0 0 2 yes 0 0 11 4 4
CD166 Train IBD CD colonic 19 severe mod_sev 150675-72 CD_FIT049E3CAL FIT049E3CAL 166 FIT049E3CAL FIT049E3CAL_GH4_01_52092.mzXML FIT049E3CAL_GH4_01_50286.mzXML PLCL26577 Plate2 H4 42019 2 Echo550 IBD200 12675.FIT049E3CAL 59 48 7 female Caucasian N 172.7 23.42 Y 0 yes unk dose (9/2013-9/2014; felt well) yes Lialda unk dose (2009-2011; stopped for elevated kidney) unk yes Pred 40 mg QD (9/2016-pres) Cimzia unk dose (9/2013-11/2015; insurance) A3 NonSNonP Left Side Colites colonic No No No 0 No Yes 1 No No 0 AZA 0.121 0.121 SF Carmen_HOWE_KF3 76.8 3.7 10.9 93.8 440 22.71 0.623387318 0.6 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__fragilis 8.729593358 0.561506072 no High 3.746607346 102 1 RC--LC Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 15 19 0 1 3 1 1 6 1 0 1 3 1 1 6 1 0 2 3 1 1 7 0 13 0 0 0 0 0 0 no 0 4 9 3 3
CD150 Train IBD CD colonic 21 severe mod_sev 150675-235 CD_FIT122E3CAL FIT122E3CAL 150 FIT122E3CAL FIT122E3CAL_BB6_01_52114.mzXML FIT122E3CAL_BB6_01_50310.mzXML PLCL30283 Plate3 B6 42019 1 Echo550 IBD200 12675.FIT122E3CAL 31 15 13 male Caucasian N 172.7 18.55 N 0 yes 50-75 mg PO 2004-2007 yes Asacol 2004-2007 yes IFX IV 2004-2007; failed yes Pred A1 S colonic No No No 0 No Yes 1 No No 3 AZA 0.0729 0.1343 Colonic HG Carmen_HOWE_KF2 10.6 9.57 0.262695581 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 13.14332795 0.637280062 no Moderate 4.624988572 153 2 to 3 LC--R Stricturing Inaccessible Accessed Accessed Inaccessible Accessed 24 0 3 3 6 1 0 3 3 6 1 0 3 3 6 18 0 1 2 3 yes 0 0 10 0 11
CD66 Test IBD CD colonic 24 severe mod_sev 150675-42 CD_FIT019E3CAL FIT019E3CAL 66 FIT019E3CAL not applicable FIT019E3CAL_BE10_01_50163.mzXML PLCL24731 not applicable not applicable 42019 2 Echo550 IBD200 12675.FIT019E3CAL 39 11 male Caucasian 27.09 unk unk unk unk A2 NonSNonP colonic No Yes No 1 No Yes 2 Yes No 0 MTX 0.0421 0.0421 Colonic SF Carmen_HOWE_KF3 42535 3.2 5.7 83.7 457 36.43 1 1 10.91849953 0.585682476 no High 4.045244784 120 0 2 2 2 6 1 0 3 3 3 6 1 0 3 0 3 3 9 0 18 0 0 0 0 0 no 0 8 0 8 8
CD115 Train IBD CD colonic 25 severe mod_sev 150675-52 CD_FIT033E3CAL FIT033E3CAL 115 FIT033E3CAL not applicable not applicable PLCL26571 not applicable not applicable 42019 1 Echo550 IBD200 12675.FIT033E3CAL 24 16 5 male Caucasian N 180.3 25.22 Y 0 unk yes unk (3/2011-unk) yes IFX unk Q4W (3/2011-3/2012) yes unk tap. (3/2013) A1 NonSNonP ileocolonic No No No 0 No Yes 2 Yes No 6 6MP Ileocolonic HG Carmen_HOWE_KF2 8 4.4 5 83.2 309 8.857 0.243123799 0.2 5.198260381 0.629629671 no Low 2.807790464 22 1 LC--R Non-S/Non-P Inaccessible Accessed Accessed Inaccessible Accessed 25 ICS 35 3 3 3 9 1 3 3 3 9 1 2 2 2 6 18 1 0 0 1 yes 0 9 8 0 8
CD201 Train IBD CD ileal 1 inactive rem_mild 150675-112 CD_FIT073E3CAL FIT073E3CAL 201 FIT073E3CAL FIT073E3CAL_BC8_01_51884.mzXML FIT073E3CAL_BC8_01_50132.mzXML PLCL26261 Plate1 C8 42019 1 Echo550 IBD200 12675.FIT073E3CAL 39 22 14 female Caucasian N 162.6 21.18 Y 2 yes 150 mg PO QD (6/2009-11/2009; doing well) yes 5-ASA unk dose (8/2002-unk) yes ADA unk dose SQ (4/2016-pres) yes Pred unk dose (8/2002-unk) Cimzia 400 mg SQ (6/2009-unk) A2 P ileal No Yes Yes 2 No Yes 1 No No 3 AZA 0.1039 0.1039 Ileal HG Carmen_HOWE_KF2 0.002173599 4.4 9.9 86.2 237 4 0.109799616 0.1 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 8.895604048 0.598365498 no Low 3.931174922 95 1 Penetrating Accessed Accessed Accessed Accessed Accessed 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 yes 1 0 0 0 0
CD81 Train IBD CD ileal 1 inactive rem_mild 150675-204 CD_FIT160E3CAL FIT160E3CAL 81 FIT160E3CAL FIT160E3CAL_GA12_01_52007.mzXML FIT160E3CAL_GA12_01_50189.mzXML PLCL27385 Plate2 A12 42019 2 Echo550 IBD200 12675.FIT160E3CAL 36 20 13 male Caucasian F 160 25.15 Y 1 yes 100 mg (12/2016-pres) yes Asacol unk dose yes IFX 5 mg/kg IV q8wks (12/2016-pres) yes Pred unk dose A2 S ileal No Yes Yes 1 No No 0 No No 2 none 0.1021 0.1021 Ileal SF Carmen_HOWE_KF3 0.3 4.5 6.4 86.2 370 2.86 0.078506725 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 5.81815218 0.528946333 no Low 3.044026643 54 2 Stricturing Accessed Accessed Accessed Accessed Accessed 60 ICS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 yes 1 0 0 0 0
CD35 Train IBD CD ileal 1 inactive rem_mild 150675-275 CD_FIT344E3CAL FIT344E3CAL 35 FIT344E3CAL FIT344E3CAL_GE10_01_52058.mzXML FIT344E3CAL_GE10_01_50247.mzXML PLCL32536 Plate2 E10 42019 3 Echo550 IBD200 12675.FIT344E3CAL 70 33 35 female Caucasian F 50.8 160 21.61 N yes "unk dose; ongoing ab pain, obstructive sx" unk unk yes Pred 60 mg PO 1982-2000; steroid dependent A2 NonSNonP ileal No No No 0 No No 0 No No 0 none 0.1492 0.1492 HG Carmen_HOWE_KF4 5.880410412 0 0 0 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 12.93527785 0.573528404 no Low 4.10638958 143 1 Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 yes 1 0 0 0 0
CD152 Test IBD CD ileal 1 inactive rem_mild 150675-275 CD_FIT245E3CAL FIT245E3CAL 152 FIT245E3CAL FIT245E3CAL_BF3_01_52165.mzXML FIT245E3CAL_BF3_01_50364.mzXML PLCL30121 Plate3 F3 42019 1 Echo550 IBD200 12675.FIT245E3CAL 70 35 female Caucasian 21.61 unk unk unk unk A2 NonSNonP ileal No No No 0 No No 0 No No 0 0.1046 0.1015 HG Carmen_HOWE_KF2 13.14 0.360691738 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__celatum 5.435163434 0.581001756 no Moderate 3.445768805 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 yes 1 0 0 0 0
CD18 Test IBD CD ileal 2 inactive rem_mild 150675-224 CD_FIT196E3CAL FIT196E3CAL 18 FIT196E3CAL FIT196E3CAL_GD5_01_52039.mzXML FIT196E3CAL_GD5_01_50227.mzXML PLCL28495 Plate2 D5 42019 2 Echo550 IBD200 12675.FIT196E3CAL 46 38 5 female Hispanic N 165.1 37.28 Y 0 yes unk dose 2013; receiving intermittently yes 5-ASA 2012-2014 yes IFX 5 mg/kg IV 2014 yes Pred 2012-7/2017; chronic use A2 P ileal No No No 0 No No 0 No No 2 none 0.1351 0.1351 Ileal SF Carmen_HOWE_KF3 0.3 11.14 0.30579193 0.3 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.489007519 0.598136296 no Moderate 3.792094399 81 1 Penetrating Accessed Accessed Accessed Accessed Accessed ICS 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 2 0 0 0 0
CD113 Train IBD CD ileal 3 mild rem_mild 150675-105 CD_FIT141E3CAL FIT141E3CAL 113 FIT141E3CAL FIT141E3CAL_GA11_01_52006.mzXML FIT141E3CAL_GA11_01_50188.mzXML PLCL29765 Plate2 A11 42019 2 Echo550 IBD200 12675.FIT141E3CAL 45 41 1 female Caucasian N 172.7 26 N 0 unk yes Lialda 4.8 g PO QD (7/2016-pres) unk yes Budesonide tap. 9 mg PO QD (pending) A3 NonSNonP ileocolonic No No No 0 No No 0 No No 0 none 0.1141 0.1141 Ileocolonic SF Carmen_HOWE_KF3 15.6 4.4 8.5 88.2 462 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 19.36935682 0.728552573 no Low 5.782257991 245 0 to 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 23 3 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 0
CD14 Train IBD CD ileal 3 mild rem_mild 150675-109 CD_FIT074E3CAL FIT074E3CAL 14 FIT074E3CAL FIT074E3CAL_GA4_01_51999.mzXML FIT074E3CAL_GA4_01_50181.mzXML PLCL26568 Plate2 A4 42019 2 Echo550 IBD200 12675.FIT074E3CAL 27 15 8 female Caucasian N 74.4 162.6 25.92 Y 1 yes 125 mg PO (7/2014-pres) yes Asacol 1200 mg PO BID (2008-11/2013) yes ADA 40 mg SQ (8/2014-2/2015) unk A1 NonSNonP ileal No Yes Yes 1 No Yes 2 No No 6 AZA 0.1078 0.1078 Ileal SF Carmen_HOWE_KF3 6.454461499 2 0.054899808 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 13.63950254 0.701620912 no Low 5.245130909 178 0 to 1 Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 3 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 0
CD65 Train IBD CD ileal 3 mild rem_mild 150675-14 CD_FIT004CCAL FIT004CCAL 65 FIT004CCAL FIT004CCAL_BF4_01_51919.mzXML FIT004CCAL_BF4_01_50171.mzXML PLCL24720 Plate1 F4 42019 1 Echo550 IBD200 12675.FIT004CCAL 55 male African American 17.27 unk unk unk unk A2 NonSNonP colonic No Yes Yes 1 No No 0 No No 3 AZA 0.127 0.127 Colonic HG Carmen_HOWE_KF2 42430 3.3 8.8 74.4 401 9 0.247049135 0.2 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 4.017217339 0.40060902 yes Low 2.020829787 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 3 yes 3 0 0 0 0
CD204 Train IBD CD ileal 3 mild rem_mild 150675-154 CD_FIT092E3CAL FIT092E3CAL 204 FIT092E3CAL FIT092E3CAL_BC6_01_51882.mzXML FIT092E3CAL_BC6_01_50130.mzXML PLCL26244 Plate1 C6 42019 2 Echo550 IBD200 12675.FIT092E3CAL 48 male Jewish unk unk unk unk 0.11 0.11 SF Carmen_HOWE_KF3 20 0.548998079 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.699597865 0.328707085 yes Moderate 1.964774259 63 1 1 0 1 0 0 1 1 1 0 0 0 no 3 0 0 0 0
CD135 Train IBD CD ileal 3 mild rem_mild 150675-162 CD_FIT107E3CAL FIT107E3CAL 135 FIT107E3CAL FIT107E3CAL_GB11_01_52019.mzXML FIT107E3CAL_GB11_01_50205.mzXML PLCL26229 Plate2 B11 42019 2 Echo550 IBD200 12675.FIT107E3CAL 37 30 4 female Caucasian N 165.1 22.5 N 0 unk unk yes IFX 5 mg/kg IV Q6wks (2/2015-8/2016) yes Entocort unk dose (7/2013; d/c ineff) A2 NonSNonP ileocolonic No No No 0 No Yes 1 No No 6 6MP 0.1487 0.1487 Ileocolonic SF Carmen_HOWE_KF3 0.5 4 0.109799616 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 17.26618676 0.74923221 no Low 5.933067403 242 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 3 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 0
CD53 Train IBD CD ileal 3 mild rem_mild 150675-168 CD_FIT135E3CAL FIT135E3CAL 53 FIT135E3CAL FIT135E3CAL_GD11_01_52045.mzXML FIT135E3CAL_GD11_01_50233.mzXML PLCL27378 Plate2 D11 42019 2 Echo550 IBD200 12675.FIT135E3CAL 36 22 10 male Middle Eastern N 78.2 182.9 23.05 Y 1 yes unk dose PO (2008) yes Mesalazine unk dose PO (2007-2008) yes IFX unk dose IV (2008-2010) yes Pred unk dose PO (2007-2009) A2 S ileocolonic Yes Yes Yes 1 No Yes 2 No No 6 6MP 0.1184 0.1184 Ileocolonic SF Carmen_HOWE_KF3 8.6 4.2 4.1 71.7 241 6.86 0.188306341 0.2 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.086471835 0.353474255 yes Low 2.024672417 53 0 to 1 Il Perianal Accessed Accessed Accessed Accessed Accessed 19 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 3 yes 3 0 0 0 0
CD23 Test IBD CD ileal 3 mild rem_mild 150675-188 CD_FIT170E3CAL FIT170E3CAL 23 FIT170E3CAL FIT170E3CAL_BB2_01_52110.mzXML FIT170E3CAL_BB2_01_50306.mzXML PLCL29760 Plate3 B2 42019 1 Echo550 IBD200 12675.FIT170E3CAL 28 10 16 female Caucasian N 167.6 18.08 Y 0 unk unk yes IFX unk dose IV (2008; d/c after 2 months) yes Pred 15 mg PO (2008; intermittent use at low dose) A1 P ileocolonic Yes No No 0 No No 0 No No 2 6MP 0.0901 0.1034 Ileocolonic HG Carmen_HOWE_KF2 0.1 0 0 0 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.160801781 0.518878143 no Low 3.089502326 62 unk "Penetrating, perianal" Accessed Accessed Accessed Accessed Accessed 3 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 0
CD49 Test IBD CD ileal 3 mild rem_mild 150675-46 CD_FIT012E3CAL FIT012E3CAL 49 FIT012E3CAL FIT012E3CAL_BB3_01_51865.mzXML FIT012E3CAL_BB3_01_50113.mzXML PLCL28222 Plate1 B3 42019 1 Echo550 IBD200 12675.FIT012E3CAL 63 42 17 female Hispanic Y 61.7 170.2 20.36 Y 3 unk unk yes Vedo unk (10/2014-12/2015; 10/2014-12/2015) yes Pred unk (1998-ineff.) Cimzia (1/2012-ineff.) A3 NonSNonP isolatedUpper No Yes Yes 3 Yes Yes 3 Yes No 6 none 0.1048 0.1048 Isolated upper HG Carmen_HOWE_KF2 2.8 4.3 8.1 89.2 324 19 0.521548175 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 4.708978258 0.578123866 no Moderate 2.941183688 34 unk Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 32 ICS 3 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 0
CD104 Test IBD CD ileal 3 mild rem_mild 150675-86 CD_FIT067E3CAL FIT067E3CAL 104 FIT067E3CAL FIT067E3CAL_BA9_01_51857.mzXML FIT067E3CAL_BA9_01_50105.mzXML PLCL26248 Plate1 A9 42019 2 Echo550 IBD200 12675.FIT067E3CAL 31 18 10 female Caucasian N 160 17.13 Y 1 unk yes Mesalamine unk PO QD (2006-unk) yes ADA 40 mg SQ (2006-unk) yes Pred unk dose PO QD (2006-unk) A2 S ileal No Yes Yes 1 No Yes 1 No No 2 none 0.1156 0.1156 Ileal SF Carmen_HOWE_KF3 1 4.4 5.8 89.5 316 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 15.27526646 0.585446062 no not applicable 4.248809131 153 1 to 2 Il stricturing Accessed Accessed Accessed Accessed Accessed 35 ICS 3 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 no 3 0 0 0 1
CD20 Train IBD CD ileal 4 mild mod_sev 150675-100 CD_FIT052E3CAL FIT052E3CAL 20 FIT052E3CAL FIT052E3CAL_GE2_01_52050.mzXML FIT052E3CAL_GE2_01_50239.mzXML PLCL26265 Plate2 E2 42019 2 Echo550 IBD200 12675.FIT052E3CAL 41 18 20 male Caucasian N 78 190.5 19.75 Y 1 unk yes Asacol(1997) yes Humira dose unk 5/2016 yes Prednisone 40 mg taper 1998 Cellcept 500 mg PO BID 9/21/2016 A1 S ileal No Yes Yes 1 No No 0 No No 3 none 0.138 0.138 small bowel SF Carmen_HOWE_KF3 0.452038933 3.2 15.9 80.7 368 12.14 0.333241834 0.3 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 19.9568142 0.665041056 no Moderate 5.378494828 272 1 to 2 Il STR Accessed Accessed Accessed Accessed Accessed 9 4 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 0 0 0 0 0 0 no 4 0 0 0 0
CD183 Train IBD CD ileal 4 mild mod_sev 150675-116 CD_FIT065E3CAL FIT065E3CAL 183 FIT065E3CAL FIT065E3CAL_BA7_01_51855.mzXML FIT065E3CAL_BA7_01_50103.mzXML PLCL26264 Plate1 A7 42019 2 Echo550 IBD200 12675.FIT065E3CAL 38 21 15 male Middle Eastern F 51.5 165.1 18.88 Y 2 yes unk dose (2002-2004) yes Asacol unk dose PO (2002-unk) yes unk dose IV (2009-12/2015; d/c pt felt well) yes Pred unk dose PO(2008-unk) Cimzia 800 mg SQ Q4wks (4/2016-pres) A2 P ileal No Yes Yes 2 No Yes 1 No No 4 none 0.1074 0.1074 Ileal SF Carmen_HOWE_KF3 134.7855446 3.9 13 86.7 327 10 0.274499039 0.3 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.716704597 0.375438508 yes Moderate 2.23543458 62 1 Il Penetrating Accessed Accessed Accessed Accessed Accessed 19 4 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 0 0 0 0 0 0 no 4 0 0 0 0
CD105 Test IBD CD ileal 4 mild mod_sev 150675-151 CD_FIT086E3CAL FIT086E3CAL 105 FIT086E3CAL FIT086E3CAL_GA6_01_52001.mzXML FIT086E3CAL_GA6_01_50183.mzXML PLCL26241 Plate2 A6 42019 2 Echo550 IBD200 12675.FIT086E3CAL 60 51 7 male Middle Eastern Y 80.7 170.2 28.04 Y 0 unk unk yes UST 90 mg SQ (12/7/2016-pres) yes Pred tap. 20 mg (5/2010-unk) Prilosec 20 mg (2011-9/2013) A3 S ileal No No No 0 No No 0 No No 0 none 0.1324 0.1324 Ileal SF Carmen_HOWE_KF3 5.532749709 10.5 76.2 315 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 13.93070939 0.725779635 no Low 5.371407574 169 1 to 2 Il stricturing Accessed Accessed Accessed Accessed Accessed 12 4 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 0 0 0 0 0 0 no 4 0 0 0 0
CD127 Train IBD CD ileal 4 mild rem_mild 150675-194 CD_FIT155E3CAL FIT155E3CAL 127 FIT155E3CAL FIT155E3CAL_GB3_01_52011.mzXML FIT155E3CAL_GB3_01_50197.mzXML PLCL27375 Plate2 B3 42019 2 Echo550 IBD200 12675.FIT155E3CAL 31 20 7 female Caucasian N 165.1 23.3 Y 1 yes 150 mg (1/2010-12/2017; d/c due to insurance) unk yes IFX 5 mg/kg q8wks (1/2010-12/2017; d/c due to insurance) unk A2 NonSNonP ileocolonic No Yes Yes 1 No No 0 No No 2 AZA 0.1068 0.1068 Ileocolonic SF Carmen_HOWE_KF3 0.1 1.71 0.046939336 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;__;__ 6.15186744 0.607875223 no Low 3.64725134 64 1 to 3 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 4 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 0 1 yes 4 0 0 0 0
CD94 Test IBD CD ileal 4 mild mod_sev 150675-99 CD_FIT080E3CAL FIT080E3CAL 94 FIT080E3CAL FIT080E3CAL_GG3_01_52078.mzXML FIT080E3CAL_GG3_01_50271.mzXML PLCL26255 Plate2 G3 42019 3 Echo550 IBD200 12675.FIT080E3CAL 28 22 2 female Asian N 162.6 N 0 unk unk yes "ADA 40 mg SQ EOW (2/2016-5/2016; from rheum, felt it was making her ill)" yes Budesonide tap. 9 mg PO QD (2013- worse w/ taper) A2 NonSNonP ileal No No No 0 No Yes 1 No No 0 none 0.1159 0.1159 Ileal HG Carmen_HOWE_KF4 0.215357956 4.8 6.8 90.7 180 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__fragilis 8.751142993 0.56101459 no not applicable 3.53651297 79 0 to 1 Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 28 4 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 0 0 0 0 0 0 no 4 0 0 0 0
CD83 Train IBD CD ileal 5 mild mod_sev 150675-199 CD_FIT129E3CAL FIT129E3CAL 83 FIT129E3CAL FIT129E3CAL_GB4_01_52012.mzXML FIT129E3CAL_GB4_01_50198.mzXML FIT129E3CAL_GB4_01_50198.mzXML PLCL29759 Plate2 B4 42019 2 Echo550 IBD200 12675.FIT129E3CAL 45 11 32 male Caucasian N 170.2 21.77 N 1 yes 1996-1998 yes Pentasa (1985-1996) yes ADA 40 mg q2wks (2008-1/2012) yes Pred (1985-unk) A1 NonSNonP ileocolonic No Yes Yes 1 No Yes 2 No No 6 none 0.12 0.12 Ileocolonic SF Carmen_HOWE_KF3 6.3 4.4 7 87.5 252 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 9.476181909 0.671625453 no Low 4.402228706 94 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 12 5 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 1 0 0 0 0 1 yes 5 0 0 0 0
CD109 Train IBD CD ileal 6 mild rem_mild 150675-10 CD_FIT006E3CAL FIT006E3CAL 109 FIT006E3CAL FIT006E3CAL_BF5_01_51920.mzXML FIT006E3CAL_BF5_01_50172.mzXML PLCL25003 Plate1 F5 42019 2 Echo550 IBD200 12675.FIT006E3CAL 26 18 4 male Caucasian N 180.3 25.98 Y 0 unk unk unk unk A2 NonSNonP ileal No No No 0 No No 0 No No 2 none 0.137 0.137 Ileal SF Carmen_HOWE_KF3 3.654671608 4.6 5.5 87.5 280 4 0.109799616 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 10.09884455 0.64692496 no Low 4.23034505 93 2 Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 28 6 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 3 0 0 0 0 3 yes 6 0 0 0 0
CD163 Train IBD CD ileal 6 mild mod_sev 150675-107 CD_FIT177E3CAL FIT177E3CAL 163 FIT177E3CAL FIT177E3CAL_GG12_01_52087.mzXML FIT177E3CAL_GG12_01_50280.mzXML PLCL21218 Plate2 G12 42019 3 Echo550 IBD200 12675.FIT177E3CAL 73 61 10 female Caucasian N 154.9 24.56 Y 1 unk yes 5-Asa unk dose (2007-unk) yes ADA unk dose (12/2014-unk) yes Budesonide unk dose (2007-unk) cholestipol unk dose (6/2015-pres) A3 S ileal No Yes No 1 No No 0 No No 3 none 0.1671 0.1671 Ileal HG Carmen_HOWE_KF4 3.5 0 0 0 no Low 0 to 1 Il Stricturing Accessed Accessed Accessed Accessed Accessed 6 1 0 0 0 0 1 0 2 0 0 0 0 2 1 2 0 0 0 0 2 2 0 1 0 0 0 0 1 yes 6 0 0 0 0
CD100 Train IBD CD ileal 6 mild mod_sev 150675-166 CD_FIT132E3CAL FIT132E3CAL 100 FIT132E3CAL FIT132E3CAL_GC3_01_52024.mzXML FIT132E3CAL_GC3_01_50211.mzXML PLCL28219 Plate2 C3 42019 3 Echo550 IBD200 12675.FIT132E3CAL 38 13 22 female Caucasian N 162.6 21.18 Y 3 yes 100 mg PO (2000-unk) yes Mesalamine unk dose PO (2000-unk) yes IFX unk dose IV (2002) yes Pred unk dose PO (1995-unk) Sulfasalazine unk dose PO (1995-unk) A1 NonSNonP ileocolonic No Yes Yes 3 Yes Yes 3 No No 6 none 0.1306 0.1306 Ileocolonic HG Carmen_HOWE_KF4 31.7 4 7.8 88.9 524 11.86 0.325555861 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 10.47321312 0.519700927 no Moderate 3.398406897 93 0 to 1 Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 20 6 1 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 0 0 2 2 0 2 0 0 0 0 2 yes 6 0 0 0 0
CD128 Train IBD CD ileal 6 mild mod_sev 150675-178 CD_FIT134E3CAL FIT134E3CAL 128 FIT134E3CAL FIT134E3CAL_GC4_01_52025.mzXML FIT134E3CAL_GC4_01_50212.mzXML PLCL27384 (done 3/8/17) Plate2 C4 42019 3 Echo550 IBD200 12675.FIT134E3CAL 38 33 2 male African American N 171.5 36.48 N 1 unk unk unk unk A2 NonSNonP colonic No Yes Yes 1 No No 0 No No 0 MTX 0.0888 0.0888 Colonic HG Carmen_HOWE_KF4 13.9 4.5 12 72.9 310 4 0.109799616 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 10.57974811 0.626026657 no Low 4.220338042 107 2 Il Non-S/Non-P Accessed Accessed Accessed Resected Resected 19 6 2 0 0 2 1 1 0 0 1 0 3 0 0 3 6 0 0 0 0 0 no 6 0 0 0 0
CD120 Test IBD CD ileal 7 moderate mod_sev 150675-11 CD_FIT001E3CAL FIT001E3CAL 120 FIT001E3CAL FIT001E3CAL_BD2_01_51892.mzXML FIT001E3CAL_BD2_01_50140.mzXML PLCL24726 Plate1 D2 42019 2 Echo550 IBD200 12675.FIT001E3CAL 40 34 1 male Hispanic F 182.9 33.9 N 0 yes 250 mg (3/2016) unk yes ADA unk (3/2015-7/2015) yes Budesonide 9 mg (11/2014-2/2015) Cimzia unk (9/2015) A2 S ileal No No No 0 No Yes 1 No No 2 AZA 0.1006 0.1006 Ileal SF Carmen_HOWE_KF3 4.793541648 4.2 4.4 92.4 313 2.86 0.078506725 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 9.781099331 0.55062815 no Low 3.510276167 83 unk Il Stricturing Accessed Accessed Accessed Accessed Accessed 31 7 2 0 0 0 0 2 1 1 0 0 0 0 1 0 3 0 0 0 0 3 6 0 1 0 0 0 0 1 yes 7 0 0 0 0
CD122 Train IBD CD ileal 7 moderate mod_sev 150675-53 CD_FIT011E3CAL FIT011E3CAL 122 FIT011E3CAL FIT011E3CAL_BB6_01_51868.mzXML FIT011E3CAL_BB6_01_50116.mzXML PLCL25004 Plate1 B6 42019 1 Echo550 IBD200 12675.FIT011E3CAL 42 38 1 male Middle Eastern N 172 32.75 Y 0 yes 2.5 mg/kg (4/2015)**hospitalization unk yes ADA 40 mg Q2W (1/2016-pres) unk A2 NonSNonP ileal No No No 0 No No 0 No No 3 MTX 0.1161 0.1161 Ileal HG Carmen_HOWE_KF2 9.337708015 4.3 12.6 77.8 181 4 0.109799616 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 9.604560894 0.327415091 yes Low 2.184652752 102 42371 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 36 7 2 0 0 0 0 2 1 1 0 0 0 0 1 0 3 0 0 0 0 3 6 0 1 0 0 0 0 1 yes 7 0 0 0 0
CD186 Train IBD CD ileal 7 moderate mod_sev 150675-65 CD_FIT030E3CAL FIT030E3CAL 186 FIT030E3CAL FIT030E3CAL_BB10_01_51872.mzXML FIT030E3CAL_BB10_01_50120.mzXML PLCL26580 Plate1 B10 42019 2 Echo550 IBD200 12675.FIT030E3CAL 39 25 11 female Caucasian N 170.2 21.3 Y 1 yes unk (7/2005-4/2006; vomiting) yes Pentasa unk (7/2005-4/2006; ineff) yes ADA unk (2011) unk Cimzia unk (2010-12/2012) A2 NonSNonP ileal No Yes Yes 1 No Yes 2 Yes No 0 MTX 0.1396 0.1396 Ileal SF Carmen_HOWE_KF3 4.776178863 4 7.4 89.4 257 17.14 0.470491353 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 11.52222198 0.313660142 yes Moderate 2.097288703 103 2 to 3 Il Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 7 2 0 0 0 0 2 1 2 0 0 0 0 2 1 2 0 0 0 0 2 4 0 1 0 0 0 0 1 yes 7 0 0 0 0
CD156 Train IBD CD ileal 8 moderate mod_sev 150675-166 CD_FIT202E3CAL FIT202E3CAL 156 FIT202E3CAL FIT202E3CAL_BB10_01_52118.mzXML FIT202E3CAL_BB10_01_50314.mzXML PLCL29770 Plate3 B10 42019 1 Echo550 IBD200 12675.FIT202E3CAL 38 female Caucasian 21.18 unk unk unk unk A1 NonSNonP ileocolonic No Yes Yes 3 Yes Yes 3 No No 6 none 0.0954 0.1176 Ileocolonic HG Carmen_HOWE_KF2 42780 4 0.109799616 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 8.620904809 0.453026276 no Low 2.948201974 91 2 0 0 0 0 2 1 1 0 0 0 0 0 0 3 0 0 0 0 3 6 0 2 0 0 0 0 2 yes 8 0 0 0 0
CD107 Test IBD CD ileal 8 moderate mod_sev 150675-187 CD_FIT162E3CAL FIT162E3CAL 107 FIT162E3CAL FIT162E3CAL_BC2_01_51878.mzXML FIT162E3CAL_BC2_01_50126.mzXML PLCL29766 Plate1 C2 42019 1 Echo550 IBD200 12675.FIT162E3CAL 55 9 44 female Caucasian N 162.6 20.4 Y 1 unk yes Enemas 1973-1986 unk yes Steroids 1973-1986 Sulfasalazine unk dose 6/1984-1986 A1 S ileocolonic No Yes Yes 1 No No 0 No No 0 none 0.1456 0.1456 Ileocolonic HG Carmen_HOWE_KF2 3.2 5.71 0.156738951 0.2 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.046192806 0.421667019 yes Low 2.680770001 82 1 il stricturing Accessed Accessed Accessed Resected Resected 8 2 0 0 2 1 1 0 0 1 0 3 0 0 3 6 0 2 0 0 2 yes 8 0 0 0 0
CD123 Train IBD CD ileal 8 moderate mod_sev 150675-33 CD_FIT265E3CAL FIT265E3CAL 123 FIT265E3CAL FIT265E3CAL_GD12_01_52046.mzXML FIT265E3CAL_GD12_01_50234.mzXML PLCL30282 Plate2 D12 42019 2 Echo550 IBD200 12675.FIT265E3CAL 32 27 1 female Caucasian N 154.9 20.86 N 0 yes unk dose (5/2016-pres) yes 2 g (9/2015) yes IFX unk dose IV (5/2016-9/2016) unk A2 P ileocolonic No No No 0 No Yes 1 Yes No 3 AZA 0.1082 0.1082 Ileocolonic SF Carmen_HOWE_KF3 1.6 0 0 0 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.798701429 0.546016834 no Low 3.368882913 72 1 to 2 Il Penetrating Accessed Accessed Accessed Accessed Accessed 8 2 0 0 0 0 2 1 3 0 0 0 0 3 1 2 0 0 0 0 2 4 0 1 0 0 0 0 1 yes 8 0 0 0 0
CD126 Train IBD CD ileal 10 moderate mod_sev 150675-243 CD_FIT279E3CAL FIT279E3CAL 126 FIT279E3CAL FIT279E3CAL_BF8_01_52170.mzXML FIT279E3CAL_BF8_01_50369.mzXML PLCL31912 Plate3 F8 42019 1 Echo550 IBD200 12675.FIT279E3CAL 27 19 6 female Caucasian N 165.1 18.11 N 0 yes 100 mg PO 8/2017-pres yes Pentasa PO 1/2013 yes ADA 40 mg EOW SQ 2014-2017 yes Pred PO 6/2012 A2 S ileal No No No 0 No Yes 1 No No 6 AZA 0.143 0.1023 Ileal HG Carmen_HOWE_KF2 28 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 12.43382694 0.705174512 no Low 5.027388672 140 1 Accessed Accessed Accessed Accessed Accessed 12 1 0 0 0 0 3 0 3 0 0 0 0 3 1 3 0 0 0 0 3 3 0 3 0 0 0 0 3 yes 10 0 0 0 0
CD124 Train IBD CD ileocolonic 6 mild mod_sev 150675-117 CD_FIT079E3CAL FIT079E3CAL 124 FIT079E3CAL FIT079E3CAL_GA7_01_52002.mzXML FIT079E3CAL_GA7_01_50184.mzXML PLCL26249 Plate2 A7 42019 2 Echo550 IBD200 12675.FIT079E3CAL 64 58 4 female Caucasian N 167.6 20.66 Y 1 yes 125 mg PO QD (5/2013-unk) unk yes ADA 40 mg SQ Q2wks (9/2013-6/2014) yes Budesonide 9 mg QD (5/2013-3/2014) Opium tincture Q3h (5/2013-unk) A3 NonSNonP ileocolonic No Yes Yes 1 No No 0 No No 3 none 0.1017 0.1017 Ileocolonic SF Carmen_HOWE_KF3 20.86 0.572604996 0.6 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__ 13.06768951 0.609171177 no High 4.503186703 168 1 Non-S/Non-P Accessed Resected Resected Resected Resected P 4 1 1 1 1 1 0 1 0 2 1 2 2 1 0 0 0 no 4 0 0 0 2
CD74 Train IBD CD ileocolonic 8 moderate rem_mild 150675-168 CD_FIT193E3CAL FIT193E3CAL 74 FIT193E3CAL FIT193E3CAL_GG10_01_52085.mzXML FIT193E3CAL_GG10_01_50278.mzXML PLCL30912 Plate2 G10 42019 3 Echo550 IBD200 12675.FIT193E3CAL 36 male Middle Eastern 23.05 unk unk unk unk A2 S ileocolonic Yes Yes Yes 1 No Yes 2 No No 6 6MP 0.1488 0.1488 Ileocolonic HG Carmen_HOWE_KF4 42787 4.2 7.7 83.3 335 6 0.164699424 0.2 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.113153444 0.441726958 yes Low 2.598522022 59 1 0 0 0 1 2 1 1 0 0 0 1 1 1 1 0 0 0 1 2 1 1 2 0 0 0 0 2 yes 5 0 0 0 3
CD198 Train IBD CD ileocolonic 8 moderate mod_sev 150675-263 CD_FIT303E3CAL FIT303E3CAL 198 FIT303E3CAL FIT303E3CAL_GF7_01_52068.mzXML FIT303E3CAL_GF7_01_50258.mzXML Missing Plate2 F7 42019 3 Echo550 IBD200 12675.FIT303E3CAL 29 20 7 male Caucasian N 188 25.04 N yes 50-150 mg PO 8/2010-11/2010; started on 50 incr to 150 unk yes ADA 40 mg SQ 11/2010-7/2011 q2wk yes Pred PO 2010 Cimzia 400 mg SQ 2011-10/2012 A2 NonSNonP ileocolonic No Yes Yes 1 No Yes 2 Yes No 1 none 0.1412 0.1412 Ileocolonic HG Carmen_HOWE_KF4 2.3 4 7.6 88.4 300 12.85 0.352731265 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 11.98119581 0.709414665 no Moderate 5.0935328 145 2 Il--R--LC-RC Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 27 1 0 0 1 10 1 1 0 0 1 11 1 2 0 0 2 10 2 2 0 0 0 0 0 no 4 0 0 0 4
CD142 Test IBD CD ileocolonic 10 moderate mod_sev 150675-17 CD_FIT024E3CAL FIT024E3CAL 142 FIT024E3CAL FIT024E3CAL_BE2_01_51907.mzXML FIT024E3CAL_BE2_01_50155.mzXML PLCL24728 Plate1 E2 42019 1 Echo550 IBD200 12675.FIT024E3CAL 26 21 0 female Asian N 66.7 162.6 25.22 N 0 yes 150 mg (5/2016-pres) unk yes IFX 5 mg/kg Q8W (2/2016-pres) unk A2 P colonic Yes No No 0 No No 0 No No 2 none 0.1166 0.1166 Colonic HG Carmen_HOWE_KF2 7.150709004 3.7 6 73.6 279 2 0.054899808 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 6.09209872 0.535202857 no Low 3.050891622 52 3 Il Penetrating Accessed Accessed Accessed Accessed Accessed 23 10 1 1 1 0 0 3 1 1 1 1 0 0 3 1 2 1 1 0 0 4 2 2 0 0 0 0 0 0 no 4 3 3 0 0
CD71 Train IBD CD ileocolonic 11 moderate mod_sev 150675-41 CD_FIT014E3CAL FIT014E3CAL 71 FIT014E3CAL FIT014E3CAL_BE7_01_51912.mzXML FIT014E3CAL_BE7_01_50160.mzXML Missing Plate1 E7 42019 2 Echo550 IBD200 12675.FIT014E3CAL 64 35 27 female Caucasian F 170.2 19.58 yes 100 mg (5/2012-1/2013) yes unk PO(1990; 2011) yes IFX unk (2006) unk Budesonide unk (2011) A2 NonSNonP ileocolonic No Yes Yes 1 No Yes 2 No No 4 none 0.1253 0.1253 Ileocolonic SF Carmen_HOWE_KF3 1 0.027449904 0 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 4.098227842 0.138046718 yes Low 0.663639571 28 unk Il Non-S/Non-P Accessed Accessed Accessed Resected Resected 3 0 0 3 1 1 0 0 1 0 3 0 0 3 9 9 3 0 1 4 yes 10 0 0 0 1
CD82 Train IBD CD ileocolonic 11 moderate mod_sev 150675-59 CD_FIT054E3CAL FIT054E3CAL 82 FIT054E3CAL FIT054E3CAL_GG5_01_52080.mzXML FIT054E3CAL_GG5_01_50273.mzXML PLCL26277 Plate2 G5 42019 3 Echo550 IBD200 12675.FIT054E3CAL 28 25 0 male Caucasian N 180.3 61.7 Y 0 unk unk unk yes Budesonide unk PO (unk-9/2016) A2 S ileal No No No 0 No No 0 No No 0 none 0.1341 0.1341 Ileal HG Carmen_HOWE_KF4 1.157246832 3.8 8.9 81.1 271 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 3.190506888 0.199916928 yes not applicable 0.891515871 22 1 Il--LC--R stricturing Accessed Accessed Accessed Accessed Accessed 10 11 1 0 1 0 1 3 1 1 0 1 0 1 3 1 2 0 1 0 1 4 2 2 1 0 0 0 0 1 yes 5 0 3 0 3
CD54 Test IBD CD ileocolonic 17 severe mod_sev 150675-101 CD_FIT068E3CAL FIT068E3CAL 54 FIT068E3CAL FIT068E3CAL_GA8_01_52003.mzXML FIT068E3CAL_GA8_01_50185.mzXML PLCL26260 Plate2 A8 42019 2 Echo550 IBD200 12675.FIT068E3CAL 26 22 0 male Middle Eastern Y 185.4 27.15 Y 0 unk unk yes ADA 40 mg SQ Q1wk (6/2016-pres) unk A2 NonSNonP ileocolonic No No No 0 No No 0 No No 3 none 0.146 0.146 Ileocolonic SF Carmen_HOWE_KF3 8.119854273 7.4 73 348 6 0.164699424 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 9.357630986 0.593752652 no Low 3.918715755 97 2 Il--LC--R Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 27 17 2 0 1 0 2 5 1 3 0 1 0 2 6 1 2 0 2 0 2 6 4 6 0 0 0 0 0 0 no 7 0 4 0 6
CD95 Train IBD CD ileocolonic 18 severe mod_sev 150675-289 CD_FIT274E3CAL FIT274E3CAL 95 FIT274E3CAL FIT274E3CAL_BC3_01_52124.mzXML FIT274E3CAL_BC3_01_50321.mzXML not done Plate3 C3 42019 1 Echo550 IBD200 12675.FIT274E3CAL 35 23 10 female Caucasian F 162.6 24.75 Y 0 yes unk dose 2008 yes Mesalamine 2008-2013; various formulations used yes ADA 40 mg SQ 2013-5/2015; d/c dt pregnancy yes Pred 2008 Sulfasalazine PO 2008 A2 ileocolonic Yes No No 0 No Yes 2 No No 6 none 0.132 0.1323 Ileocolonic HG Carmen_HOWE_KF2 3.14 0.086192698 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 9.213006849 0.555965015 no Low 3.685690353 99 1 to 2 rc S/p/p Accessed Accessed Accessed Accessed Accessed ICS 19 3 0 0 2 0 5 1 3 0 0 1 0 4 1 3 0 0 3 0 6 9 6 0 0 0 3 0 3 yes 9 0 0 9 0
CD167 Train IBD CD ileocolonic 23 severe mod_sev 150675-206 CD_FIT268E3CAL FIT268E3CAL 167 FIT268E3CAL FIT268E3CAL_GC7_01_52028.mzXML FIT268E3CAL_GC7_01_50215.mzXML PLCL30117 Plate2 C7 42019 2 Echo550 IBD200 12675.FIT268E3CAL 28 male Asian 19.97 unk unk unk unk A1 P colonic Yes No No 0 No Yes 1 No No 3 none 0.1697 0.1697 Colonic SF Carmen_HOWE_KF3 42906 6.86 0.188306341 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 8.069806416 0.513636214 no Low 3.137559375 69 1 0 2 0 2 5 1 1 0 1 0 0 1 3 0 3 0 3 9 3 12 3 0 0 0 3 6 yes 8 0 6 0 8
CD160 Test IBD CD ileocolonic 26 severe mod_sev 150675-256 CD_FIT231E3CAL FIT231E3CAL 160 FIT231E3CAL FIT231E3CAL_GE5_01_52053.mzXML FIT231E3CAL_GE5_01_50242.mzXML PLCL31491 Plate2 E5 42019 3 Echo550 IBD200 12675.FIT231E3CAL 31 10 20 male Caucasian N 180.3 21.34 Y 1 unk yes Asacol unk dose 1998 yes IFX 5 mg/kg IV 2002; responded but no maintenance yes Pred unk dose 1998 Cimzia SQ 2012-2013 A1 NonSNonP ileocolonic No Yes Yes 1 No Yes 3 Yes No 6 6MP 0.1522 0.1522 Ileocolonic HG Carmen_HOWE_KF4 3.2 13 0.356848751 0.4 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 9.54599226 0.617728847 no Moderate 4.09514482 99 2 RC--LC--R Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 26 3 0 3 1 0 7 1 3 0 2 1 0 6 1 3 0 3 1 0 7 9 10 3 0 3 0 0 6 yes 12 0 11 3 0
CD121 Train IBD CD ileocolonic 30 severe mod_sev 150675-291 CD_FIT281E3CAL FIT281E3CAL 121 FIT281E3CAL FIT281E3CAL_BC7_01_52128.mzXML FIT281E3CAL_BC7_01_50325.mzXML PLCL31910 Plate3 C7 42019 1 Echo550 IBD200 12675.FIT281E3CAL 54 47 5 female Caucasian N 94.4 165.1 33.25 N 1 unk yes Pentasa 11/2013-02/2014 yes Humira 40 mg SQ (02/2014-05/2017) yes Entocort 9 mg PO (05/2018-pres) A3 P ileocolonic Yes Yes Yes 1 No Yes 1 No No 6 none 0.649 0.1589 Ileocolonic HG Carmen_HOWE_KF2 3.6 3.9 10.3 91.6 497 16.5 0.452923415 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 3.429592502 0.517921959 no Moderate 2.434460946 26 1 to 2 ileum--rc--lc--rectum "Penetrating, perianal" Accessed Accessed Accessed Accessed Accessed 21 30 2 2 2 2 2 10 1 2 2 2 2 2 10 1 3 1 1 1 1 7 6 8 3 0 0 0 0 3 yes 10 5 5 5 5
CD64 Train IBD CD none 0 inactive rem_mild 150675-104 CD_FIT093E3CAL FIT093E3CAL 64 FIT093E3CAL FIT093E3CAL_BC7_01_51883.mzXML FIT093E3CAL_BC7_01_50131.mzXML PLCL26236 Plate1 C7 42019 2 Echo550 IBD200 12675.FIT093E3CAL 49 25 21 female Caucasian N 171.5 26.33 N 0 unk unk unk yes Pred unk dose (1995-unk) Flagyl unk dose (1995-unk) A2 NonSNonP ileocolonic Yes No No 0 No No 0 No No 0 none 0.1272 0.1272 Ileocolonic SF Carmen_HOWE_KF3 16.8 0 0 0 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 14.89989513 0.514059393 no Low 3.749868318 157 1 Perianal Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD145 Train IBD CD none 0 inactive rem_mild 150675-114 CD_FIT114E3CAL FIT114E3CAL 145 FIT114E3CAL FIT114E3CAL_GG2_01_52077.mzXML FIT114E3CAL_GG2_01_50270.mzXML Missing Plate2 G2 42019 3 Echo550 IBD200 12675.FIT114E3CAL 23 11 10 female Caucasian N 165.1 18.5 Y 1 yes unk dose (2009-2010; elevated LTF) yes Asacol trial (2008-2010) yes IFX unk dose (2010-2012; no improvement in symptoms) yes Pred tap. (4/2016-pres) Cymbalta unk dose (7/2016-unk; helpful) A1 NonSNonP Unk ileocolonic No Yes Yes 1 No Yes 2 Yes No 0 none 0.1658 0.1658 HG Carmen_HOWE_KF4 0.3 12.6 77 830 13 0.356848751 0.4 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 10.71627974 0.525170374 no Moderate 3.44227588 94 1 to 2 Il--RC--LC--R 15 IS 0 0 0 0 0 0 0 0 0 0 0 0 0
CD56 Train IBD CD none 0 inactive rem_mild 150675-115 CD_FIT084E3CAL FIT084E3CAL 56 FIT084E3CAL FIT084E3CAL_BC4_01_51880.mzXML FIT084E3CAL_BC4_01_50128.mzXML PLCL26232 Plate1 C4 42019 2 Echo550 IBD200 12675.FIT084E3CAL 28 15 10 female Caucasian Y 170.2 24.59 Y 2 yes 100 mg PO QD (2008-8/2013; held due to b. infection) unk yes IFX unk dose IV (2007-unk) unk Dilaludid 24 mg PO QD (5/2013-unk) A1 NonSNonP ileal No Yes Yes 2 Yes Yes 2 No No 0 none 0.1058 0.1058 Ileal SF Carmen_HOWE_KF3 0.351746684 34 0.933296733 0.9 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 2.637752418 0.505069808 no High 2.02027923 16 1 to 2 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD159 Train IBD CD none 0 inactive rem_mild 150675-117 CD_FIT152E3CAL FIT152E3CAL 159 FIT152E3CAL FIT152E3CAL_GC9_01_52030.mzXML FIT152E3CAL_GC9_01_50217.mzXML PLCL21231 Plate2 C9 42019 2 Echo550 IBD200 12675.FIT152E3CAL 64 female Caucasian 20.66 unk unk unk unk A3 NonSNonP ileocolonic No Yes Yes 1 No No 0 No No 3 none 0.1707 0.1707 Ileocolonic SF Carmen_HOWE_KF3 43005 29 0.796047214 0.8 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 12.63022602 0.537964145 no High 3.789631459 132 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD169 Train IBD CD none 0 inactive rem_mild 150675-133 CD_FIT095E3CAL FIT095E3CAL 169 FIT095E3CAL FIT095E3CAL_BC3_01_51879.mzXML FIT095E3CAL_BC3_01_50127.mzXML PLCL26239 Plate1 C3 42019 1 Echo550 IBD200 12675.FIT095E3CAL 56 35 18 female Caucasian N 172.7 31.04 Y 0 yes unk dose PO (2004; d/c elevated LFTs) yes Asacol unk dose PO (1998-2007) yes IFX unk dose IV (2004-2005) yes Pred unk dose PO (1998-1999) A2 NonSNonP colonic No No No 0 No Yes 1 No No 3 none 0.1667 0.1667 Colonic HG Carmen_HOWE_KF2 5.8 4.5 7.7 94.9 330 16 0.439198463 0.4 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ no Moderate Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD157 Train IBD CD none 0 inactive rem_mild 150675-151 CD_FIT241E3CAL FIT241E3CAL 157 FIT241E3CAL FIT241E3CAL_GB6_01_52014.mzXML FIT241E3CAL_GB6_01_50200.mzXML PLCL30279 Plate2 B6 42019 2 Echo550 IBD200 12675.FIT241E3CAL 60 male Middle Eastern 28.04 Y unk unk unk unk A3 S ileal No No No 0 No No 0 No No 0 none 0.1157 0.1157 Ileal SF Carmen_HOWE_KF3 42689 4 7.1 84.1 204 3.43 0.09415317 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 12.86010304 0.752720462 no Low 5.504556636 159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD68 Train IBD CD none 0 inactive rem_mild 150675-156 CD_FIT127E3CAL FIT127E3CAL 68 FIT127E3CAL FIT127E3CAL_GC2_01_52023.mzXML FIT127E3CAL_GC2_01_50210.mzXML PLCL27370 Plate2 C2 42019 3 Echo550 IBD200 12675.FIT127E3CAL 33 19 11 female Caucasian N 185.4 30.11 Y 1 unk yes Pentasa 4 g PO (12/2005-2007) unk yes Entocort PO (12/2005-unk) A2 S ileal No Yes Yes 1 No No 0 No No 0 6MP 0.1487 0.1487 Ileal HG Carmen_HOWE_KF4 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 9.045184801 0.524817475 no Low 3.308334294 79 1 to 2 stricturing Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD188 Train IBD CD none 0 inactive rem_mild 150675-170 CD_FIT118E3CAL FIT118E3CAL 188 FIT118E3CAL FIT118E3CAL_BA2_01_51850.mzXML FIT118E3CAL_BA2_01_50098.mzXML PLCL26218 Plate1 A2 42019 1 Echo550 IBD200 12675.FIT118E3CAL 69 17 49 male Caucasian N 175.3 20.67 Y 3 unk unk unk unk Imodium 1 tab PO (2/2017-pres) A2 NonSNonP ileocolonic No Yes Yes 3 No No 0 No No 0 none 0.1358 0.1358 Ileocolonic HG Carmen_HOWE_KF2 4.9 3.6 3.6 97.9 102 22.86 0.627504804 0.6 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.576554325 0.371250644 yes High 2.084464648 49 0 to 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD61 Train IBD CD none 0 inactive rem_mild 150675-171 CD_FIT121E3CAL FIT121E3CAL 61 FIT121E3CAL FIT121E3CAL_GD7_01_52041.mzXML FIT121E3CAL_GD7_01_50229.mzXML PLCL27387 Plate2 D7 42019 2 Echo550 IBD200 12675.FIT121E3CAL 32 13 17 male Middle Eastern N 167.6 24.15 Y 2 yes unk PO (2009) yes unk (2000) yes IFX unk IV (2005) yes Pred (2000) A1 NonSNonP ileal No Yes Yes 2 No Yes 2 No Yes 1 none 0.1352 0.1352 Isolated upper SF Carmen_HOWE_KF3 2.2 4.3 4.8 74.2 204 9.14 0.250892122 0.3 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 7.497673307 0.274542182 yes Moderate 1.594363894 56 2 to 3 Non-S/Non-P Accessed Accessed Accessed Resected Accessed 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD197 Train IBD CD none 0 inactive rem_mild 150675-173 CD_FIT125E3CAL FIT125E3CAL 197 FIT125E3CAL FIT125E3CAL_GB12_01_52020.mzXML FIT125E3CAL_GB12_01_50206.mzXML PLCL28211 Plate2 B12 42019 2 Echo550 IBD200 12675.FIT125E3CAL 26 16 7 female Hispanic N 160 19.27 Y 0 unk unk yes IFX (2013-2014; d/c developed immunogenicity) unk A1 NonSNonP colonic No No No 0 No Yes 2 No No 0 none 0.1331 0.1331 Colonic SF Carmen_HOWE_KF3 0.5 4 0.109799616 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 9.746838107 0.634641297 no Low 4.368009508 118 0 to 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD141 Train IBD CD none 0 inactive rem_mild 150675-180 CD_FIT131E3CAL FIT131E3CAL 141 FIT131E3CAL FIT131E3CAL_GD3_01_52037.mzXML FIT131E3CAL_GD3_01_50225.mzXML PLCL27373 Plate2 D3 42019 2 Echo550 IBD200 12675.FIT131E3CAL 71 39 30 male Caucasian N 96.7 182.9 28.92 Y 0 unk yes Rowasa enemas QOD PR (3/2013-7/2013) yes ADA unk dose q4wks (8/2009-unk) yes Pred (1990) Azulfidine (1/1987-6/1987; allergic) A2 NonSNonP colonic No No No 0 No Yes 3 No No 1 none 0.143 0.143 Colonic SF Carmen_HOWE_KF3 21.3 4 8.7 91.1 297 2 0.054899808 0.1 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 14.84395253 0.720524217 no Low 5.426542731 185 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD3 Train IBD CD none 0 inactive rem_mild 150675-180 CD_FIT309E3CAL FIT309E3CAL 3 FIT309E3CAL FIT309E3CAL_BB4_01_52112.mzXML FIT309E3CAL_BB4_01_50308.mzXML PLCL27373 Plate3 B4 42019 1 Echo550 IBD200 12675.FIT309E3CAL 71 male Caucasian 28.92 unk unk unk unk A2 NonSNonP colonic No No No 0 No Yes 3 No No 1 none 0.1402 0.1375 Colonic HG Carmen_HOWE_KF2 42780 4 8.7 91.1 297 2 0.054899808 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 13.09453841 0.666158165 no Low 4.82826609 152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD90 Train IBD CD none 0 inactive rem_mild 150675-193 CD_FIT169E3CAL FIT169E3CAL 90 FIT169E3CAL not applicable not applicable PLCL29758 not applicable not applicable 42019 1 Echo550 IBD200 12675.FIT169E3CAL 29 25 1 female Mixed/Non-Hispanic F 172.7 17.58 Y 0 unk unk unk unk A2 NonSNonP ileocolonic No No No 0 No Yes 1 No No 6 none 0.0742 0.1246 Ileocolonic HG Carmen_HOWE_KF2 4.9 8 0.219599231 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 11.14790821 0.670425132 no Low 4.519648893 107 2 to 3 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD75 Train IBD CD none 0 inactive rem_mild 150675-195 CD_FIT146E3CAL FIT146E3CAL 75 FIT146E3CAL FIT146E3CAL_GF11_01_52073.mzXML FIT146E3CAL_GF11_01_50264.mzXML PLCL21226 Plate2 F11 42019 3 Echo550 IBD200 12675.FIT146E3CAL 60 53 5 male Caucasian N 175.3 29.98 N 0 yes 40 mg SQ (6/2012) unk yes ADA 150 mg PO (6/2012) unk Colace 200 mg PO (10/2012) A3 NonSNonP ileal No No No 0 No No 0 No No 3 AZA 0.1005 0.1005 Ileal HG Carmen_HOWE_KF4 2.2 4.1 5.8 95.6 283 4.86 0.133406533 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__uniformis 13.59507752 0.56228396 no Low 4.212548825 180 2 to 3 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD165 Train IBD CD none 0 inactive rem_mild 150675-216 CD_FIT076E3CAL FIT076E3CAL 165 FIT076E3CAL FIT076E3CAL_GE7_01_52055.mzXML FIT076E3CAL_GE7_01_50244.mzXML PLCL30113 Plate2 E7 42019 3 Echo550 IBD200 12675.FIT076E3CAL 40 15 24 male Caucasian N 165.1 24.86 Y 0 unk unk unk unk A1 ileal No No No 0 No No 0 No No 0 AZA 0.1247 0.1247 Ileal HG Carmen_HOWE_KF4 11.28 0.309634916 0.3 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 12.50555717 0.645451958 no Moderate 4.64704261 147 1 pt-declined-tissue-bx S/p Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD155 Train IBD CD none 0 inactive rem_mild 150675-223 CD_FIT222E3CAL FIT222E3CAL 155 FIT222E3CAL FIT222E3CAL_GD2_01_52036.mzXML FIT222E3CAL_GD2_01_50224.mzXML PLCL31215 Plate2 D2 42019 2 Echo550 IBD200 12675.FIT222E3CAL 28 19 6 male Caucasian N 177.8 22.1 Y 0 yes unk dose 9/2011; vomiting unk yes ADA 40 mg SQ 12/2013 qweekly yes Pred unk dose PO A2 NonSNonP ileocolonic No No No 0 No No 0 No No 1 none 0.1465 0.1465 Ileocolonic SF Carmen_HOWE_KF3 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__ 8.413977673 0.529006037 no Low 3.305191372 76 2 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD45 Train IBD CD none 0 inactive rem_mild 150675-227 CD_FIT192E3CAL FIT192E3CAL 45 FIT192E3CAL FIT192E3CAL_BA5_01_51853.mzXML FIT192E3CAL_BA5_01_50101.mzXML PLCL28498 Plate1 A5 42019 2 Echo550 IBD200 12675.FIT192E3CAL 32 24 6 male Caucasian N 182.9 29.81 N 1 yes 150 mg 8/2011-5/2012 unk yes ADA 40 mg SQ 5/2012 q2wks unk A2 P ileocolonic No Yes Yes 1 No No 0 No No 3 none 0.1444 0.1444 Ileocolonic SF Carmen_HOWE_KF3 16.71 0.458687895 0.5 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 9.261811153 0.586531073 no Moderate 3.826271792 92 1 to 2 Penetrating Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD41 Train IBD CD none 0 inactive rem_mild 150675-234 CD_FIT191E3CAL FIT191E3CAL 41 FIT191E3CAL FIT191E3CAL_BD5_01_51895.mzXML FIT191E3CAL_BD5_01_50143.mzXML PLCL28499 Plate1 D5 42019 1 Echo550 IBD200 12675.FIT191E3CAL.A 66 80 17 male Caucasian N 182.9 24.04 Y 1 unk unk yes IFX 5 mg/kg IV 2004-2009 q8wks yes Pred tap. 40 mg PO 9/2012 A3 S ileal No Yes Yes 1 No Yes 1 No No 6 none 0.1318 0.1318 Ileal HG Carmen_HOWE_KF2 5 0.13724952 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 9.433822119 0.474948084 no Low 3.226994797 111 1 Stricturing Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD174 Train IBD CD none 0 inactive rem_mild 150675-24 CD_FIT008E3CAL FIT008E3CAL 174 FIT008E3CAL FIT008E3CAL_BD3_01_51893.mzXML FIT008E3CAL_BD3_01_50141.mzXML PLCL24730 Plate1 D3 42019 2 Echo550 IBD200 12675.FIT008E3CAL 51 33 14 male Hispanic F 215.45 180.3 66.96 Y 0 unk unk yes IFX 1 dose (2001) yes Pred unk (2001) Hyoscyamine 4 tabs (5/2016) A2 NonSNonP colonic No No No 0 No Yes 1 No No 0 none 0.1003 0.1003 Colonic SF Carmen_HOWE_KF3 12.66013785 4.3 8.3 87.9 282 4.13 0.113368103 0.1 k__Bacteria;p__Tenericutes;c__Mollicutes;o__RF39;f__;g__;s__ 22.41888731 0.744516023 no Low 6.235351053 332 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD103 Train IBD CD none 0 inactive rem_mild 150675-24 CD_FIT008CCAL FIT008CCAL 103 FIT008CCAL FIT008CCAL_BD10_01_51900.mzXML FIT008CCAL_BD10_01_50148.mzXML PLCL24730 Plate1 D10 42019 2 Echo550 IBD200 12675.FIT008CCAL 51 male Hispanic 66.96 unk unk unk unk A2 NonSNonP colonic No No No 0 No Yes 1 No No 0 none 0.1162 0.1162 Colonic SF Carmen_HOWE_KF3 4.3 8.3 87.9 282 4.13 0.113368103 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__ 18.81062213 0.719715826 no Low 5.797514252 266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD88 Train IBD CD none 0 inactive rem_mild 150675-255 CD_FIT226E3CAL FIT226E3CAL 88 FIT226E3CAL FIT226E3CAL_GE3_01_52051.mzXML FIT226E3CAL_GE3_01_50240.mzXML PLCL31488 Plate2 E3 42019 2 Echo550 IBD200 12675.FIT226E3CAL 40 28 11 male Caucasian N 171.5 28.08 N 0 unk yes Pentasa PO 2007-2011 unk unk A2 NonSNonP colonic No No No 0 No Yes 1 No No 2 none 0.1275 0.1275 Colonic SF Carmen_HOWE_KF3 1.5 6.86 0.188306341 0.2 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 14.21464085 0.649151019 no Low 4.894052622 186 1 to 2 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD151 Train IBD CD none 0 inactive rem_mild 150675-257 CD_FIT263E3CAL FIT263E3CAL 151 FIT263E3CAL FIT263E3CAL_BE11_01_52160.mzXML FIT263E3CAL_BE11_01_50358.mzXML PLCL30123 Plate3 E11 42019 1 Echo550 IBD200 12675.FIT263E3CAL 35 26 8 male Caucasian N 188 25.88 Y 0 unk yes Lialda PO 2010-9/2011; no improvement yes IFX 5 mg/kg IV q8wks 6/2014 unk A2 NonSNonP ileocolonic Yes No No 0 No No 0 No No 2 none 0.0966 0.1118 Ileocolonic HG Carmen_HOWE_KF2 3.5 0 0 0 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 13.19822107 0.622145866 no Low 4.571980844 163 1 Perianal Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD99 Train IBD CD none 0 inactive rem_mild 150675-261 CD_FIT227E3CAL FIT227E3CAL 99 FIT227E3CAL FIT227E3CAL_BE6_01_51911.mzXML FIT227E3CAL_BE6_01_50159.mzXML PLCL31492 Plate1 E6 42019 2 Echo550 IBD200 12675.FIT227E3CAL 63 47 14 female Caucasian N 81.6 172.7 27.37 N 0 yes 100/125 mg PO 2012 alternating days yes Lialda 3.6 g PO 6/2011-2011 yes IFX 5 mg/kg IV 2003-2004; d/c after 5 doses when remission achieved unk Cimzia 400 mg SQ 2011; rash A3 NonSNonP ileocolonic No No No 0 No Yes 3 Yes No 6 AZA 0.1203 0.1203 Ileocolonic SF Carmen_HOWE_KF3 10.8 4.1 4.3 100.3 253 14.86 0.407905572 0.4 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 4.703851415 0.405493352 yes Moderate 2.252348854 47 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD9 Train IBD CD none 0 inactive rem_mild 150675-285 CD_FIT275E3CAL FIT275E3CAL 9 FIT275E3CAL FIT275E3CAL_BE3_01_52151.mzXML FIT275E3CAL_BE3_01_50350.mzXML PLCL32121 Plate3 E3 42019 1 Echo550 IBD200 12675.FIT275E3CAL 27 23 2 male Caucasian N 175.3 27.02 Y 1 unk unk unk unk ADA 40 mg q2wk SQ 2/2016-6/2016 A2 S ileocolonic No Yes Yes 1 No Yes 1 No No 2 none 0.1083 0.1033 Ileocolonic HG Carmen_HOWE_KF2 4.4 10.6 88 236 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 8.398184164 0.670090834 no Low 4.489903241 104 1 to 2 stricturing Accessed Accessed Accessed Accessed Accessed 19.6 ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD147 Train IBD CD none 0 inactive rem_mild 150675-286 CD_FIT249E3CAL FIT249E3CAL 147 FIT249E3CAL FIT249E3CAL_BC10_01_52131.mzXML FIT249E3CAL_BC10_01_50328.mzXML PLCL32117 Plate3 C10 42019 1 Echo550 IBD200 12675.FIT249E3CAL 27 16 9 male Caucasian N 193 23.05 Y 0 unk unk yes ADA 40 mg q2wks SQ 9/2015-8/2016 yes Pred 40 mg PO 7/2008 A1 NonSNonP colonic No No No 0 No Yes 1 No No 2 6MP 0.1115 0.1223 Colonic HG Carmen_HOWE_KF2 0 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;__;__;__ 8.140902283 0.589355681 no Low 3.907048989 99 1 to 2 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD72 Train IBD CD none 0 inactive rem_mild 150675-293 CD_FIT255E3CAL FIT255E3CAL 72 FIT255E3CAL FIT255E3CAL_BE12_01_52161.mzXML FIT255E3CAL_BE12_01_50359.mzXML PLCL32120 Plate3 E12 42019 1 Echo550 IBD200 12675.FIT255E3CAL 30 18 11 male Caucasian N 167.6 23.57 N 0 yes PO yes Asacol 2007; ineffective yes IFX 2010; primary non-responder yes Pred 7/2016 Tofacitinib 10 mg BID PO 4/2017-1/2018 A2 NonSNonP Left Side Colites colonic No No No 0 No Yes 2 Yes No 6 none 0.117 0.1187 HG Carmen_HOWE_KF2 2.1 4 0.109799616 0.1 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 14.47192767 0.654343086 no Low 4.982632736 196 1 to 2 Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD158 Test IBD CD none 0 inactive rem_mild 150675-294 CD_FIT250E3CAL FIT250E3CAL 158 FIT250E3CAL FIT250E3CAL_BC8_01_52129.mzXML FIT250E3CAL_BC8_01_50326.mzXML PLCL32115 Plate3 C8 42019 1 Echo550 IBD200 12675.FIT250E3CAL 36 29 6 male Caucasian N 180.3 20.07 Y yes 50 mg PO 2016 yes Lialda 3.6 g PO 2016-2017; instance lapse unk yes Pred 2012-2016; on/off Colazal 2012 A2 P Pancolites colonic Yes No No 0 No No 0 No No 2 AZA 0.0601 0.1231 Colonic HG Carmen_HOWE_KF2 20.1 3.9 5.5 83.3 267 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 20.39917932 0.629099864 no not applicable 4.874387064 215 unk R 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD149 Test IBD CD none 0 inactive rem_mild 150675-306 CD_FIT295E3CAL FIT295E3CAL 149 FIT295E3CAL FIT295E3CAL_GG8_01_52083.mzXML FIT295E3CAL_GG8_01_50276.mzXML PLCL32545 Plate2 G8 42019 2 Echo550 IBD200 12675.FIT295E3CAL 38 7 30 male Caucasian N 165.1 20.27 Y 1 unk unk yes IFX IV 2007-2010; infusion rx yes Pred 1988 Sulfasalazine A1 S ileocolonic No Yes Yes 1 No Yes 2 No No 0 none 0.1291 0.1291 Ileocolonic SF Carmen_HOWE_KF3 4.86 0.133406533 0.1 k__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__;s__ 4.717549213 0.490759224 no Low 2.646329513 42 0 to 1 Accessed Accessed Accessed Accessed Accessed ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD87 Test IBD CD none 0 inactive rem_mild 150675-34 CD_FIT207E3CAL FIT207E3CAL 87 FIT207E3CAL FIT207E3CAL_GG6_01_52081.mzXML FIT207E3CAL_GG6_01_50274.mzXML PLCL31231 Plate2 G6 42019 3 Echo550 IBD200 12675.FIT207E3CAL 3 26 17 female Caucasian F 167.6 25.02 Y 0 yes unk (12/2001) yes unk (12/2001) yes IFX 5 mg/kg Q8W (6/2003-5/2013) yes Pred (2000; 12/2001) Warfarin (2000; 2001) A2 S colonic No No No 0 No No 0 No No 2 none 0.1027 0.1027 Colonic HG Carmen_HOWE_KF4 2.1 2 0.054899808 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 19.62480422 0.728111907 no Low 5.833069954 258 Stricturing Accessed Accessed Accessed Accessed Accessed 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD1 Test IBD CD none 0 inactive rem_mild 150675-37 CD_FIT013E3CAL FIT013E3CAL 1 FIT013E3CAL FIT013E3CAL_GF12_01_52074.mzXML FIT013E3CAL_GF12_01_50265.mzXML PLCL20912 Plate2 F12 42019 3 Echo550 IBD200 12675.FIT013E3CAL 44 37 4 female Caucasian N 165.1 35.11 N 0 unk yes 400 mg (8/2015) yes ADA (2012-pain at injection sites) yes "Pred (2012-side fx, no resp.)" Budesonide (2012-side fx) A3 NonSNonP ileal No No No 0 No Yes 1 Yes No 0 none 0.1288 0.1288 Ileal HG Carmen_HOWE_KF4 11.53444708 3.8 6.6 88.1 240 20.43 0.560801537 0.6 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 15.96471471 0.661239895 no High 4.921571178 174 0-1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD195 Test IBD CD none 0 inactive rem_mild 150675-46 CD_FIT106E3CAL FIT106E3CAL 195 FIT106E3CAL FIT106E3CAL_GB10_01_52018.mzXML FIT106E3CAL_GB10_01_50204.mzXML PLCL28222 Plate2 B10 42019 2 Echo550 IBD200 12675.FIT106E3CAL 63 female Hispanic 20.36 unk unk unk unk A3 NonSNonP isolatedUpper No Yes Yes 3 Yes Yes 3 Yes No 6 none 0.1351 0.1351 Isolated upper SF Carmen_HOWE_KF3 42563 4.3 8.1 89.2 324 19 0.521548175 0.5 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.013872171 0.391146965 yes Moderate 2.135440106 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD196 Test IBD CD none 0 inactive rem_mild 150675-49 CD_FIT053E3CAL FIT053E3CAL 196 FIT053E3CAL FIT053E3CAL_BB4_01_51866.mzXML FIT053E3CAL_BB4_01_50114.mzXML PLCL26273 Plate1 B4 42019 1 Echo550 IBD200 12675.FIT053E3CAL 27 9 5 female Caucasian N 172.7 25.27 N 0 yes unk (05/2001-05/2006) yes unk (05/2001-05/2006) yes IFX unk (2003; few doses) yes Pred (2001-unk) A1 NonSNonP ileocolonic No No No 0 No No 0 No No 2 none 0.1012 0.1012 Ileocolonic HG Carmen_HOWE_KF2 0.488629721 7.9 94.9 330 2 0.054899808 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__S24-7;g__;s__ no Low unk (0-1) Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD176 Test IBD CD none 0 inactive rem_mild 150675-63 CD _FIT198E3CAL FIT198E3CAL 176 FIT198E3CAL FIT198E3CAL_GA5_01_52000.mzXML FIT198E3CAL_GA5_01_50182.mzXML PLCL30055 Plate2 A5 42019 2 Echo550 IBD200 12675.FIT198E3CAL 54 14 36 male Caucasian N 182.9 25.44 Y yes 175 mg (1/2015; abdominal cramps; pain) unk yes ADA unk loading dose (1/2015) yes Cortenema unk (1994-1996) Imodium 2x QD (7/2012) A1 NonSNonP Left Side Colites ileal No Yes Yes 1 No Yes 0 No No 3 6MP 0.1068 0.1068 Ileal SF Carmen_HOWE_KF3 1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 6.721835319 0.396521229 yes not applicable 2.302739509 56 1 Non-S/Non-P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD4 Test IBD CD none 0 inactive rem_mild 150675-78 CD_FIT060E3CAL FIT060E3CAL 4 FIT060E3CAL FIT060E3CAL_GF10_01_52071.mzXML FIT060E3CAL_GF10_01_50263.mzXML PLCL26275 Plate2 F10 42019 3 Echo550 IBD200 12675.FIT060E3CAL 54 44 7 male Caucasian F 85.27 172.7 25.85 Y 0 unk yes unk dose (2011; ineff) unk yes Pred unk dose (2011; ineff) A3 NonSNonP colonic No No No 0 No No 0 No No 0 6MP 0.1813 0.1813 Colonic HG Carmen_HOWE_KF4 5 4.4 8.3 91.1 192 2.86 0.078506725 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 7.156457605 0.550376072 no Low 3.384673664 71 1 Non-S/Non-P Accessed Accessed Accessed Accessed Accessed 38 ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD191 Test IBD CD none 0 inactive rem_mild 150675-81 CD_FIT038E3CAL FIT038E3CAL 191 FIT038E3CAL FIT038E3CAL_BB5_01_51867.mzXML FIT038E3CAL_BB5_01_50115.mzXML PLCL26576 Plate1 B5 42019 1 Echo550 IBD200 12675.FIT038E3CAL 37 21 12 female Caucasian N 172.7 20.07 Y 2 unk unk yes IFX unk dose IV (unk; failed therapy) unk Cimzia unk dose (unk; failed therapy) A2 NonSNonP ileocolonic No Yes Yes 2 No Yes 2 Yes Yes 2 AZA 0.1492 0.1492 Colonic HG Carmen_HOWE_KF2 4.3 8.9 90.3 439 13.86 0.380455668 0.4 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 10.31675841 0.58883716 no Moderate 3.793844548 87 unk Perianal Accessed Resected Resected Resected Resected 11 IS 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD181 Test IBD CD none 0 inactive rem_mild 150675-87 CD_FIT078E3CAL FIT078E3CAL 181 FIT078E3CAL FIT078E3CAL_BA8_01_51856.mzXML FIT078E3CAL_BA8_01_50104.mzXML PLCL26578 Plate1 A8 42019 2 Echo550 IBD200 12675.FIT078E3CAL 38 16 19 female Caucasian F 48.1 152.4 20.7 Y 1 unk yes Asacol unk dose (1997) yes IFX unk dose IV (1998-1999) yes Pred unk dose (1997) Cimzia 400 mg SQ (07/01/2017-2017);allergic rxn A1 S colonic No Yes Yes 1 No Yes 1 No No 0 none 0.1506 0.1506 Colonic SF Carmen_HOWE_KF3 0.237157096 4.5 4.4 93.6 331 6.86 0.188306341 0.2 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 5.608784741 0.163152935 yes Low 0.868288187 40 unk stricturing Accessed Accessed Accessed Accessed Accessed 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
CD190 Test IBD CD none 0 inactive rem_mild 150675-95 CD_FIT077E3CAL FIT077E3CAL 190 FIT077E3CAL FIT077E3CAL_GE9_01_52057.mzXML FIT077E3CAL_GE9_01_50246.mzXML PLCL26270 Plate2 E9 42019 2 Echo550 IBD200 12675.FIT077E3CAL 56 17 35 female Caucasian N 165.1 23.26 Y 1 yes 75 mg PO QD (2/2016-pres) yes Asacol unk dose (2006-unk) yes ADA unk dose SQ (2010; developed stricture) yes Pred unk dose (2006-unk) Reglan 10 mg TID (10/2016-pres) A2 NonSNonP isolatedUpper No Yes No 1 No Yes 2 No No 1 AZA 0.144 0.144 Isolated upper SF Carmen_HOWE_KF3 0.1 4.7 8 97.5 408 2 0.054899808 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 10.9477779 0.257799893 yes Low 1.780595656 120 0 to 1 Non-S/Non-P Inaccessible Accessed Accessed Accessed Accessed 24 ICS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 no 0 0 0 0 0
HC47 Train HC HC control HC1 Healthy_control_107212 107212 47 107212 000107212_BA6_01_52101.mzXML 000107212_BA6_01_50296.mzXML Healthy_control Plate3 not applicable 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0501 0.1052 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Tenericutes;c__Mollicutes;o__RF39;f__;g__;s__ 22.22018347 0.777304059 no Control 6.422159858 307 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC67 Train HC HC control HC10 Healthy_control_107222 107222 67 107222 000107222_BC12_01_52133.mzXML 000107222_BC12_01_50330.mzXML Healthy_control Plate3 A4 42019 1 Echo550 IBD200 12675.10722 controls controls controls controls Not applicable 0.1198 0.148 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 13.00500285 0.644317575 no Control 4.68211828 154 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC119 Train HC HC control HC11 Healthy_control_107223 107223 119 107223 107223_BE7_01_52156.mzXML 107223_BE7_01_50354.mzXML Healthy_control Plate3 E7 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0725 0.1392 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 11.12437931 0.604639188 no Control 4.239262757 129 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC114 Train HC HC control HC12 Healthy_control_107225 107225 114 107225 000107225_BC2_01_52123.mzXML 000107225_BC2_01_50320.mzXML Healthy_control Plate3 B3 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.138 0.1458 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__ 15.53385533 0.755018498 no Control 5.909188881 227 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC39 Train HC HC control HC13 Healthy_control_107226 107226 39 107226 107226_BE4_01_52152.mzXML 107226_BE4_01_50351.mzXML Healthy_control Plate3 E4 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0863 0.1121 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 16.42967703 0.72361077 no Control 5.536383408 201 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC38 Train HC HC control HC15 Healthy_control_107229 107229 38 107229 107229_BD10_01_52144.mzXML 107229_BD10_01_50342.mzXML Healthy_control Plate3 D10 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0391 0.1137 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 14.45597183 0.737666192 no Control 5.617114015 196 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC31 Train HC HC control HC16 Healthy_control_107231 107231 31 107231 000107231_BD3_01_52137.mzXML 000107231_BD3_01_50335.mzXML Healthy_control Plate3 B4 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1417 0.1405 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 15.30611334 0.698195642 no Control 5.25837771 185 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC32 Train HC HC control HC17 Healthy_control_107582 107582 32 107582 107582_BE9_01_52158.mzXML 107582_BE9_01_50356.mzXML Healthy_control Plate3 E9 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1152 0.1037 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Ruminococcus;s__bromii 21.84340797 0.720465905 no Control 5.945764073 305 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC27 Train HC HC control HC18 Healthy_control_107590 107590 27 107590 000107590_BC4_01_52125.mzXML 000107590_BC4_01_50322.mzXML Healthy_control Plate3 B5 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0741 0.12 HG Carmen_HOWE_KF2 0 0 no Control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC184 Train HC HC control HC19 Healthy_control_107591 107591 184 107591 000107591_BB9_01_52117.mzXML 000107591_BB9_01_50313.mzXML Healthy_control Plate3 B6 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0741 0.1528 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 9.783520251 0.645679025 no Control 4.280436516 99 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC62 Train HC HC control HC2 Healthy_control_107213 107213 62 107213 107213_BF10_01_52172.mzXML 107213_BF10_01_50371.mzXML Healthy_control Plate3 F10 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0952 0.1443 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 17.12220226 0.727437511 no Control 5.684037545 225 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC30 Train HC HC control HC20 Healthy_control_1072320 1072320 30 1072320 1072320_BB8_01_52116.mzXML 1072320_BB8_01_50312.mzXML Healthy_control Plate3 B7 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0459 0.1358 HG Carmen_HOWE_KF2 0 0 no Control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC175 Train HC HC control HC21 Healthy_control_107217 107217 175 107217 107217_BF2_01_52164.mzXML 107217_BF2_01_50363.mzXML Healthy_control Plate3 F2 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1132 0.1122 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__ 16.24524938 0.680718257 no Control 5.305801182 222 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC46 Test HC HC control HC3 Healthy_control_107214 107214 46 107214 000107214_BA10_01_52105.mzXML 000107214_BA10_01_50300.mzXML Healthy_control Plate3 not applicable 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0607 0.1146 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 10.39391403 0.611889331 no Control 4.165347852 112 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC40 Test HC HC control HC4 Healthy_control_107215 107215 40 107215 000107215_BB11_01_52119.mzXML 000107215_BB11_01_50315.mzXML Healthy_control Plate3 not applicable 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1374 0.1374 HG Carmen_HOWE_KF2 0 0 11.00084248 0.123637061 yes Control 0.783840421 81 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC28 Test HC HC control HC5 Healthy_control_107218 107218 28 107218 107218_BD12_01_52146.mzXML 107218_BD12_01_50344.mzXML Healthy_control Plate3 D12 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1069 0.1393 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 14.74987967 0.761064362 no Control 5.670851231 175 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC34 Test HC HC control HC6 Healthy_control_107219 107219 34 107219 000107219_BA8_01_52103.mzXML 000107219_BA8_01_50298.mzXML Healthy_control Plate3 not applicable 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.0649 0.1075 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 15.01007552 0.754355098 no Control 5.771609847 201 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC29 Test HC HC control HC7 Healthy_control_107220 107220 29 107220 107220_BD6_01_52140.mzXML 107220_BD6_01_50338.mzXML Healthy_control Plate3 D6 42019 1 Echo550 IBD200 12675.10722 controls controls controls controls Not applicable 0.0739 0.1597 HG Carmen_HOWE_KF2 0 0 no Control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
HC69 Test HC HC control HC8 Healthy_control_107221 107221 69 107221 107221_BE8_01_52157.mzXML 107221_BE8_01_50355.mzXML Healthy_control Plate3 E8 42019 1 Echo550 IBD200 12675.00011 controls controls controls controls Not applicable 0.1609 0.1323 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 12.59163275 0.679104266 no Control 4.915631541 151 Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control Healthy_control
UC42 Train IBD UC UC 0 0 150675-113 UC_150675-113 150675.113 42 150675-113 150675_113_BA2_01_52097.mzXML 150675_113_BA2_01_50292.mzXML Missing Plate3 B8 42019 1 Echo550 IBD200 12675.150675.113 33 25 8 male Caucasian N 180.3 N 0 1 0 1 yes 150 mg QD (4/2016-pres) yes Rowasa enema unk dose (1/2012-unk) unk yes Budesonide unk dose (4/2015-6/2015; ineff) Colazal 6.75 g QD (1/2012-unk) 0 0 AZA 0.1072 0.1072 HG Carmen_HOWE_KF2 0 0 13.08572069 0.613361748 no Low 4.300418606 129 0 unk UC UC UC UC UC UC 0 3 0 0 1 1 1 0 0 0 0
UC200 Train IBD UC UC 0 0 150675-137 UC_FIT287E3CAL FIT287E3CAL 200 FIT287E3CAL FIT287E3CAL_BC11_01_51887.mzXML FIT287E3CAL_BC11_01_50135.mzXML PLCL32540 Plate1 C11 42019 2 Echo550 IBD200 12675.FIT287E3CAL 48 21 female Caucasian N 0 0 unk unk unk unk 0 1 AZA 0.1565 0.1565 SF Carmen_HOWE_KF3 4 14.2 94.9 455 0.888888889 0.9 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 7.977983903 0.625529579 no High 4.100089205 94 1 UC UC UC UC UC UC 0 3 0 1 1 1 0 1 2 0 1
UC73 Train IBD UC UC 0 0 150675-137 UC_FIT314E3CAL FIT314E3CAL 73 FIT314E3CAL FIT314E3CAL_GE11_01_52059.mzXML FIT314E3CAL_GE11_01_50248.mzXML PLCL32540 Plate2 E11 42019 3 Echo550 IBD200 12675.FIT314E3CAL 49 22 female Caucasian 0 0 unk unk unk unk 0 1 AZA 0.1015 0.1015 HG Carmen_HOWE_KF4 4 14.2 94.9 455 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 10.57358246 0.660056621 no Low 4.484699177 111 1 UC UC UC UC UC UC 0 3 0 1 1 1 0 1 2 0 1
UC10 Train IBD UC UC 0 0 150675-155 UC_FIT270E3CAL FIT270E3CAL 10 FIT270E3CAL FIT270E3CAL_BC5_01_52126.mzXML FIT270E3CAL_BC5_01_50323.mzXML PLCL30120 Plate3 C5 42019 1 Echo550 IBD200 12675.FIT270E3CAL 47 26 21 male Caucasian F 172.7 Y 1 1 0 1 unk unk unk unk Left Side Colites 1 2 AZA 0.0614 0.126 HG Carmen_HOWE_KF2 0.111111111 0.1 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 9.66262519 0.616416848 no Low 4.121671581 103 0 0 to 1 UC UC UC UC UC UC 1 2 0 1 1 1 1 1 1 1 0
UC170 Train IBD UC UC 0 0 150675-155 UC_FIT099E3CAL FIT099E3CAL 170 FIT099E3CAL FIT099E3CAL_BC9_01_51885.mzXML FIT099E3CAL_BC9_01_50133.mzXML PLCL26269 Plate1 C9 42019 2 Echo550 IBD200 12675.FIT099E3CAL 46 20 male Caucasian Y 1 0 unk unk unk unk 0 1 AZA 0.1138 0.1138 SF Carmen_HOWE_KF3 0.111111111 0.1 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 9.533069077 0.684289115 no Low 4.692841743 116 1 UC UC UC UC UC UC 0 2 1 1 1 1 1 1 2 0 0
UC125 Train IBD UC UC 0 0 150675-155 UC_FIT151E3CAL FIT151E3CAL 125 FIT151E3CAL FIT151E3CAL_GC8_01_52029.mzXML FIT151E3CAL_GC8_01_50216.mzXML PLCL27381 Plate2 C8 42019 2 Echo550 IBD200 12675.FIT151E3CAL 47 21 male Caucasian 1 0 unk unk unk unk 0 1 AZA 0.1315 0.1315 SF Carmen_HOWE_KF3 0.111111111 0.1 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 10.53221003 0.595104643 no Low 3.936444538 98 1 UC UC UC UC UC UC 0 2 1 1 1 1 1 1 2 0 0
UC161 Train IBD UC UC 0 0 150675-197 UC_FIT158E3CAL FIT158E3CAL 161 FIT158E3CAL FIT158E3CAL_GB2_01_52010.mzXML FIT158E3CAL_GB2_01_50196.mzXML PLCL27383 Plate2 B2 42019 2 Echo550 IBD200 12675.FIT158E3CAL 37 26 11 female Caucasian N 160 Y 2 0 0 1 unk yes Lialda (2009-3/2015) yes ADA 40 mg q2wks (3/2015-pres) unk Pancolites 1 3 6MP 0.1518 0.1518 SF Carmen_HOWE_KF3 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;__;__ 14.11538578 0.753773655 no Low 5.604026891 173 0 1 UC UC UC UC UC UC 0 3 0 0 1 0 1 2 1 0 0
UC21 Train IBD UC UC 0 0 150675-211 UC_FIT142E3CAL FIT142E3CAL 21 FIT142E3CAL FIT142E3CAL_BD2_01_52136.mzXML FIT142E3CAL_BD2_01_50334.mzXML Missing Plate3 D2 42019 1 Echo550 IBD200 12675.FIT142E3CAL 26 21 5 female Caucasian N 166.4 N 0 0 0 0 unk yes Canasa (3/2015-pres) unk unk 0 0 none 0.1 0.1105 HG Carmen_HOWE_KF2 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 13.88957523 0.613922084 no Low 4.579509804 176 0 0 to 1 UC UC UC UC UC UC 1 1 0 0 1 1 0 0 0 1 0
UC164 Train IBD UC UC 0 0 150675-231 UC_FIT210E3CAL FIT210E3CAL 164 FIT210E3CAL FIT210E3CAL_GH3_01_52091.mzXML FIT210E3CAL_GH3_01_50285.mzXML PLCL31236 Plate2 H3 42019 3 Echo550 IBD200 12675.FIT210E3CAL 59 39 20 female Caucasian F 68 172.7 N 0 0 0 1 unk yes Lialda 2.4 g PO 2016-pres unk yes Uceris 9 mg PO 11/2013; nausea Colazal 750 mg tid 2000 Left Side Colites 0 0 none 0.1056 0.1056 HG Carmen_HOWE_KF4 0.222222222 0.2 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 21.27020059 0.697358121 no Low 5.755063263 305 0 2 to 4 UC UC UC UC UC UC 2 2 0 0 1 1 0 0 0 2 0
UC89 Train IBD UC UC 0 0 150675-244 UC_FIT194E3CAL FIT194E3CAL 89 FIT194E3CAL FIT194E3CAL_GH2_01_52090.mzXML FIT194E3CAL_GH2_01_50284.mzXML PLCL30916 Plate2 H2 42019 3 Echo550 IBD200 12675.FIT194E3CAL 26 12 14 female African American N 165.1 N 4 0 0 1 unk unk unk unk Left Side Colites 1 1 6MP 0.1355 0.1355 HG Carmen_HOWE_KF4 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 11.78107683 0.723204495 no Low 5.163355633 141 0 1 UC UC UC UC UC UC 1 2 0 0 1 0 1 1 1 1 0
UC93 Train IBD UC UC 0 0 150675-253 UC_FIT219E3CAL FIT219E3CAL 93 FIT219E3CAL FIT219E3CAL_GE8_01_52056.mzXML FIT219E3CAL_GE8_01_50245.mzXML PLCL31213 Plate2 E8 42019 3 Echo550 IBD200 12675.FIT219E3CAL 42 23 19 female Caucasian N 165.1 N 4 0 0 0 unk yes Asacol PO 2000-2010 yes VED 300 mg IV 10/2015 unk Balsalazide 6.75 G pop 2010-10/2015 Left Side Colites 0 1 none 0.1198 0.1198 HG Carmen_HOWE_KF4 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 17.68081263 0.685611858 no Low 5.433345423 243 0 1 UC UC UC UC UC UC 0 2 0 0 1 0 0 4 1 0 0
UC179 Train IBD UC UC 0 0 150675-254 UC_FIT288E3CAL FIT288E3CAL 179 FIT288E3CAL FIT288E3CAL_BD7_01_51897.mzXML FIT288E3CAL_BD7_01_50145.mzXML Missing Plate1 D7 42019 1 Echo550 IBD200 12675.FIT288E3CAL 23 4 male Caucasian 1 0 unk unk unk unk 0 1 AZA 0.1608 0.1608 HG Carmen_HOWE_KF2 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 11.13603158 0.640842151 no Low 4.449055926 123 1 UC UC UC UC UC UC 0 3 0 0 1 1 1 2 0 1
UC133 Train IBD UC UC 0 0 150675-268 UC_FIT266E3CAL FIT266E3CAL 133 FIT266E3CAL FIT266E3CAL_GD6_01_52040.mzXML FIT266E3CAL_GD6_01_50228.mzXML unable to get Plate2 D6 42019 3 Echo550 IBD200 12675.FIT266E3CAL 49 40 9 female Caucasian N 172.7 N 0 0 0 1 unk unk unk unk Left Side Colites 0 0 none 0.1241 0.1241 HG Carmen_HOWE_KF4 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 12.54394223 0.566753869 no Low 3.954400392 126 0 3 no-tissue-taken UC UC UC UC UC UC 0 2 0 0 1 1 0 0 0 1 0
UC92 Train IBD UC UC 0 0 150675-281 UC_FIT292E3CAL FIT292E3CAL 92 FIT292E3CAL FIT292E3CAL_GF6_01_52067.mzXML FIT292E3CAL_GF6_01_50257.mzXML PLCL31905 Plate2 F6 42019 3 Echo550 IBD200 12675.FIT292E3CAL 21 14 7 male Caucasian N 185.4 N 4 2 0 1 yes 100 mg PO 11/2016; headaches yes Lialda 4.8 g PO 2013 yes ADA 40 mg SQ 1/2017-4/2017 yes Uceris 9 mg 12/2016; ineff Left Side Colites 2 1 6MP 0.174 0.174 HG Carmen_HOWE_KF4 0 0 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 11.2992696 0.654921922 no Low 4.613528139 132 0 0 to 1 UC UC UC UC UC UC 0 2 0 0 1 0 1 "2,3" 1 0 0
UC154 Train IBD UC UC 0 0 150675-292 UC_FIT253E3CAL FIT253E3CAL 154 FIT253E3CAL FIT253E3CAL_BD8_01_52142.mzXML FIT253E3CAL_BD8_01_50340.mzXML PLCL32116 Plate3 D8 42019 1 Echo550 IBD200 12675.FIT253E3CAL 53 47 6 female Caucasian N 162.6 N 4 0 0 1 unk yes Lialda 4.8 g PO 7/2014 yes ADA 40 mg SQ 12/2014 yes Pred PO 1/2015 Sulfasalazine PO 1/2015-9/2015 Pancolites 1 1 MTX 0.0602 0.137 HG Carmen_HOWE_KF2 0.333333333 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 14.60245335 0.722303451 no Moderate 5.451147909 187 0 UC UC UC UC UC UC 3 3 0 0 1 0 1 1 1 3 0
UC36 Train IBD UC UC 0 0 150675-317 UC_150675-317 150675.317 36 150675-317 150675_317_BF5_01_52167.mzXML 150675_317_BF5_01_50366.mzXML Missing Plate3 B9 42019 1 Echo550 IBD200 12675.150675.317 50 35 15 female Caucasian N 157.5 N 4 0 0 1 unk yes Asacol 2.4 g PO 2004-11/2017 unk unk left side colites 0 1 none 0.0606 0.1099 HG Carmen_HOWE_KF2 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 13.72616516 0.684153207 no Low 4.932370643 148 0 1 to 2 UC UC UC UC UC UC 0 2 0 0 1 1 0 4 1 0 0
UC132 Test IBD UC UC 0 0 150675-38 UC_FIT018CCAL FIT018CCAL 132 FIT018CCAL FIT018CCAL_BD12_01_51902.mzXML FIT018CCAL_BD12_01_50150.mzXML PLCL26579 Plate1 D12 42019 2 Echo550 IBD200 12675.FIT018CCAL 58 29 29 female Caucasian N 177.8 N 0 0 0 0 unk unk unk yes Cortafoam unk (1990-pres) Proctitis 0 0 none 0.1243 0.1243 SF Carmen_HOWE_KF3 0.111111111 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 13.95124672 0.569144659 no Low 4.236111537 174 0 1 UC UC UC UC UC UC 1 1 0 0 0 0 0 0 0 1 0
UC146 Test IBD UC UC 0 0 150675-48 UC_FIT032E3CAL FIT032E3CAL 146 FIT032E3CAL FIT032E3CAL_BB2_01_51864.mzXML FIT032E3CAL_BB2_01_50112.mzXML PLCL26271 Plate1 B2 42019 2 Echo550 IBD200 12675.FIT032E3CAL 47 42 5 female Caucasian N 172.7 N 0 0 0 0 unk yes unk PR (2/2014-unk) unk unk Proctitis 0 0 none 0.1432 0.1432 SF Carmen_HOWE_KF3 4.6 4.4 90.1 336 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Erysipelotrichi;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Catenibacterium;s__ 18.96875997 0.741630326 no Low 5.961906114 263 0 unk UC UC UC UC UC UC 30 1 1 0 0 1 1 0 0 0 1 0
UC171 Test IBD UC UC 0 0 150675-48 UC_FIT036CCAL FIT036CCAL 171 FIT036CCAL FIT036CCAL_BB7_01_51869.mzXML FIT036CCAL_BB7_01_50117.mzXML PLCL26271 Plate1 B7 42019 2 Echo550 IBD200 12675.FIT036CCAL 47 5 female Caucasian 0 0 unk unk unk unk 0 0 none 0.0313 0.0313 SF Carmen_HOWE_KF3 4.6 4.4 90.1 336 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__ 18.45146269 0.74989149 no Low 6.036512926 265 1 UC UC UC UC UC UC 0 1 0 1 1 0 0 0 0 0 0
UC50 Test IBD UC UC 0 0 150675-5 UC_FIT025E3CAL FIT025E3CAL 50 FIT025E3CAL FIT025E3CAL_BE3_01_51908.mzXML FIT025E3CAL_BE3_01_50156.mzXML PLCL21063 Plate1 E3 42019 2 Echo550 IBD200 12675.FIT025E3CAL 64 34 30 female Caucasian N 157.5 Y 0 0 0 1 unk yes 2.4 g (1/1990-1/2011; 8/2015) unk yes Pred 40 mg tap. (4/2012) Left Side Colites 0 0 6MP 0.1408 0.1408 SF Carmen_HOWE_KF3 4 5.8 100.6 259 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Coprococcus;s__ 10.22542659 0.700813929 no Low 4.724513968 107 0 unk UC UC UC UC UC UC 15 0 2 0 0 1 0 1 0 0 0 0
UC205 Test IBD UC UC 0 0 150675-77 UC_FIT128E3CAL FIT128E3CAL 205 FIT128E3CAL FIT128E3CAL_GD9_01_52043.mzXML FIT128E3CAL_GD9_01_50231.mzXML PLCL27368 Plate2 D9 42019 2 Echo550 IBD200 12675.FIT128E3CAL 56 27 29 female Caucasian F 157.5 Y 1 1 0 1 yes 100 mg (8/2016-pres) yes unk dose (1990-2015; intermittent) yes 10 mg/kg IV Q4wks (5/2016-pres) yes Pred unk dose (1990-2015; intermittent) Solumedrol unk dose IV (5/2016) Pancolites 1 2 AZA 0.1159 0.1159 SF Carmen_HOWE_KF3 4.1 8.5 97.6 316 0.111111111 0.1 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 12.47283783 0.657038655 no Low 4.599270585 128 0 2 UC UC UC UC UC UC 316 1 3 0 1 1 0 1 1 1 0 1
UC173 Test IBD UC UC 0 0 150675-9 UC_FIT002CCAL FIT002CCAL 173 FIT002CCAL FIT002CCAL_BE12_01_51914.mzXML FIT002CCAL_BE12_01_50165.mzXML PLCL24724 Plate1 E12 42019 2 Echo550 IBD200 12675.FIT002CCAL 31 15 16 female Hispanic N 160 Y 2 2 0 1 unk yes unk (6/2009) yes ADA 40 mg Q2W(5/2016) yes Pred unk (5/2004) Proctitis 0 0 6MP 0.1013 0.1013 SF Carmen_HOWE_KF3 4.2 4.7 92.1 297 0 0 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 7.534024864 0.556191043 no Low 3.464413166 75 0 2 UC UC UC UC UC UC 39 0 1 0 0 1 0 1 0 0 0 0
UC102 Test IBD UC UC 0 0 150675-9 UC_FIT126E3CAL FIT126E3CAL 102 FIT126E3CAL FIT126E3CAL_GD8_01_52042.mzXML FIT126E3CAL_GD8_01_50230.mzXML PLCL28217 Plate2 D8 42019 3 Echo550 IBD200 12675.FIT126E3CAL 32 17 female Hispanic 1 0 unk unk unk unk 0 2 AZA 0.1078 0.1078 HG Carmen_HOWE_KF4 4 11.8 99 334 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__faecis 11.65104893 0.68199071 no Low 4.633728499 111 0 UC UC UC UC UC UC 0 1 0 1 0 1 2 1 3 0 0
UC182 Train IBD UC UC 1 0 150675-284 UC_FIT290E3CAL FIT290E3CAL 182 FIT290E3CAL FIT290E3CAL_BC10_01_51886.mzXML FIT290E3CAL_BC10_01_50134.mzXML PLCL31908 Plate1 C10 42019 2 Echo550 IBD200 12675.FIT290E3CAL 64 15 female Caucasian 1 0 unk unk unk unk 1 4 none 0.1301 0.1301 SF Carmen_HOWE_KF3 0.222222222 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Oscillospira;s__ 25.33864032 0.741989978 no Low 6.267651093 349 2 UC UC UC UC UC UC 2 3 1 1 1 1 1 1 1 0 1
UC199 Train IBD UC UC 1 0 150675-5 UC_FIT108E3CAL FIT108E3CAL 199 FIT108E3CAL FIT108E3CAL_BB12_01_51874.mzXML FIT108E3CAL_BB12_01_50122.mzXML PLCL26246 Plate1 B12 42019 1 Echo550 IBD200 12675.FIT108E3CAL 64 30 female Caucasian 1 0 unk unk unk unk 0 1 none 0.1196 0.1196 HG Carmen_HOWE_KF2 3.8 6.4 96.3 302 0.222222222 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Coprococcus;s__ 11.47328619 0.647355361 no Low 4.355355373 106 2 UC UC UC UC UC UC 2 2 0 1 0 1 2 1 2 0 1
UC84 Train IBD UC UC 1 1 150675-102 UC_FIT211E3CAL FIT211E3CAL 84 FIT211E3CAL FIT211E3CAL_GE4_01_52052.mzXML FIT211E3CAL_GE4_01_50241.mzXML PLCL31218 Plate2 E4 42019 2 Echo550 IBD200 12675.FIT211E3CAL 32 23 9 female Caucasian N 51.3 160 Y 1 3 0 1 yes unk dose (2014; stopped due to leukopenia) yes Asacol unk dose (2012-unk) yes ADA unk dose (7/2015-unk) yes Steroids unk dose IV (1/2016-unk) "Sulfasalzine unk dose (2012; intolerant, switch to Asacol)" Pancolites 2 2 MTX 0.1205 0.1205 SF Carmen_HOWE_KF3 0 0 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 9.20433446 0.594388418 no Low 3.789249603 83 1 unk UC UC UC UC UC UC 2 3 0 0 1 0 1 2 1 1 0
UC80 Train IBD UC UC 1 1 150675-189 UC_FIT189E3CAL FIT189E3CAL 80 FIT189E3CAL not applicable not applicable PLCL29722 not applicable not applicable 42019 1 Echo550 IBD200 12675.FIT189E3CAL 33 28 5 female Caucasian N 167.6 Y 0 0 0 1 unk yes 2.4 g PO (8/2016-pres) unk yes Pred tap. Unk dose (8/2016-unk) Left Side Colites 0 0 none 0.0966 0.1372 HG Carmen_HOWE_KF2 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Coprococcus;s__ 5.928831751 0.720309708 no Low 4.085903039 51 1 1 UC UC UC UC UC UC 1 2 0 0 1 1 0 0 0 0 0
UC153 Train IBD UC UC 1 1 150675-202 UC_FIT264E3CAL FIT264E3CAL 153 FIT264E3CAL FIT264E3CAL_BA3_01_52098.mzXML FIT264E3CAL_BA3_01_50293.mzXML PLCL30280 Plate3 A3 42019 1 Echo550 IBD200 12675.FIT264E3CAL 50 25 25 male Caucasian N 182.9 N 2 0 0 1 unk yes Asacol 3.6 g unk unk yes 4.8 g 2017 Sulfasalazine 4 g 1995 Left Side Colites 1 3 none 0.1453 0.1179 HG Carmen_HOWE_KF2 0.444444444 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Megasphaera;s__ 8.258893134 0.403853014 yes Moderate 2.634560158 92 1 1 R UC UC UC UC UC UC 4 2 0 0 1 0 0 2 1 3 0
UC131 Train IBD UC UC 1 1 150675-221 UC_FIT218E3CAL FIT218E3CAL 131 FIT218E3CAL FIT218E3CAL_GH5_01_52093.mzXML FIT218E3CAL_GH5_01_50287.mzXML PLCL30911 Plate2 H5 42019 3 Echo550 IBD200 12675.FIT218E3CAL 55 49 6 female Middle Eastern N 160 Y 0 0 1 1 unk yes Rowasa trial 4 g PO 2014 unk unk Sulfasalazine 7/2017 Proctitis 0 0 none 0.166 0.166 HG Carmen_HOWE_KF4 0.111111111 0.1 k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;__;__ 5.138437909 0.428110152 yes Low 2.246691043 38 1 3 UC UC UC UC UC UC 1 1 0 0 1 1 0 0 0 0 0
UC91 Train IBD UC UC 1 1 150675-225 UC_FIT221E3CAL FIT221E3CAL 91 FIT221E3CAL FIT221E3CAL_GC12_01_52033.mzXML FIT221E3CAL_GC12_01_50220.mzXML PLCL31217 Plate2 C12 42019 2 Echo550 IBD200 12675.FIT221E3CAL 41 39 2 male Caucasian N 198.1 N 0 0 0 0 unk unk unk unk Rectosigmoiditis 0 0 none 0.1338 0.1338 SF Carmen_HOWE_KF3 0.111111111 0.1 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 16.07452346 0.718879323 no Low 5.474057461 196 1 2 R UC UC UC UC UC UC 1 1 0 0 1 1 0 0 0 0 0
UC22 Train IBD UC UC 1 1 150675-313 UC_FIT285E3CAL FIT285E3CAL 22 FIT285E3CAL FIT285E3CAL_BD9_01_52143.mzXML FIT285E3CAL_BD9_01_50341.mzXML PLCL31907 Plate3 D9 42019 1 Echo550 IBD200 12675.FIT285E3CAL 56 42 14 female Caucasian N 157.5 N 0 0 0 1 unk yes Lialda 2.4g unk yes Prednisone Sulfasalazine 2005 Left Side Colites 0 0 none 0.1003 0.1003 HG Carmen_HOWE_KF2 0.222222222 0.2 13.2462649 0.625831133 no Low 4.582290556 160 1 2 R UC UC UC UC UC UC 2 2 0 0 1 1 0 0 0 1 0
UC26 Test IBD UC UC 1 1 150675-332 UC_150675-332 150675.332 26 150675-332 150675_332_BD11_01_52145.mzXML 150675_332_BD11_01_50343.mzXML PLCL33181 Plate3 B12 42019 1 Echo550 IBD200 12675.150675.332 53 41 12 male Caucasian N 187.3 Y 4 0 0 1 unk yes Asacol PO 2007 past yes ADA 40 mg q2w SQ 01/2018-05/2018 yes Pred PO 2007 PRN Pancolites 1 1 none 0.0995 0.0995 HG Carmen_HOWE_KF2 4.2 9.4 88.2 330 0.222222222 0.2 9.091199134 0.601451442 no Low 3.969527099 97 1 1 UC UC UC UC UC UC 21 2 3 0 0 1 0 0 2 1 1 0
UC6 Test IBD UC UC 1 1 150675-92 UC_FIT048E3CAL FIT048E3CAL 6 FIT048E3CAL FIT048E3CAL_GF9_01_52070.mzXML FIT048E3CAL_GF9_01_50260.mzXML PLCL26245 Plate2 F9 42019 3 Echo550 IBD200 12675.FIT048E3CAL 33 29 4 female Asian N 157.5 N 1 0 0 1 yes unk dose PO (6/2016-2016; d/c leukopenia) yes Canasa unk dose PO (2/2015-unk) yes VED 300 mg IV (10/2015-1/2016) yes Pred 40 mg PO (7/2015-8/2015) Proctitis 1 2 AZA 0.1105 0.1105 HG Carmen_HOWE_KF4 4 4 92.1 239 0.222222222 0.2 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 9.36994458 0.458376968 no Low 3.025248035 97 1 0 to 1 UC UC UC UC UC UC 48 2 1 0 0 1 0 1 "1,4" 1 1 0
UC140 Train IBD UC UC 1 2 150675-110 UC_FIT101E3CAL FIT101E3CAL 140 FIT101E3CAL FIT101E3CAL_GB8_01_52016.mzXML FIT101E3CAL_GB8_01_50202.mzXML PLCL28221 Plate2 B8 42019 2 Echo550 IBD200 12675.FIT101E3CAL 66 45 21 female Middle Eastern F 179 N 0 0 0 0 unk yes Mesalamine 1.5 g PO QD (4/2016-pres) unk unk Proctitis 0 0 none 0.111 0.111 SF Carmen_HOWE_KF3 7 92.3 161 0.111111111 0.1 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__ 16.87143697 0.736348301 no Low 5.795329686 234 1 1 UC UC UC UC UC UC 24 1 1 0 1 1 1 0 0 0 0 0
UC15 Train IBD UC UC 1 2 150675-283 UC_FIT280E3CAL FIT280E3CAL 15 FIT280E3CAL FIT280E3CAL_BB5_01_52113.mzXML FIT280E3CAL_BB5_01_50309.mzXML plcl31911 Plate3 B5 42019 1 Echo550 IBD200 12675.FIT280E3CAL 45 42 3 female Caucasian F 109.8 175.3 N 4 0 0 1 unk yes Cortenemas yes VED 300 mg IV 11/2017 yes Uceris Proctosigmoiditis 0 1 none 0.0717 0.0717 HG Carmen_HOWE_KF2 4 12.1 94.5 421 0.111111111 0.1 9.004541687 0.171067507 yes Low 1.072043551 77 1 1 to 2 r UC UC UC UC UC UC 19 1 1 0 1 1 0 0 4 1 0 0
UC168 Test IBD UC UC 1 2 150675-56 UC_FIT242E3CAL FIT242E3CAL 168 FIT242E3CAL not applicable not applicable PLCL30277 not applicable not applicable 42019 1 Echo550 IBD200 12675.FIT242E3CAL 36 22 14 male Caucasian N 188 N 1 1 0 1 yes 150 mg (2014-unk) yes 4.8 g (2008-2012) yes ADA 40 mg (10/2012-3/2013) yes Pred unk (2008-2012; 3/2013; 6/2013) Pancolites 2 2 AZA 0.1531 0.1424 HG Carmen_HOWE_KF2 4.4 7.6 93.9 322 0.555555556 0.6 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Megasphaera;s__ 6.676653159 0.353388747 yes High 2.173251432 71 1 43832 UC UC UC UC UC UC 37 1 3 0 0 1 0 1 "1,2" 1 0 0
UC25 Train IBD UC UC 1 3 150675-246 UC_FIT206E3CAL FIT206E3CAL 25 FIT206E3CAL FIT206E3CAL_BD4_01_52138.mzXML FIT206E3CAL_BD4_01_50336.mzXML PLCL31234 Plate2 D4 42019 2 Echo550 IBD200 12675.FIT206E3CAL 61 39 22 male Caucasian N 180.3 N 0 0 0 1 unk yes Asacol unk yes Pred Augmentin Pancolites 0 0 6MP 0.1234 0.1234 SF Carmen_HOWE_KF3 0.444444444 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Veillonella;s__parvula 8.950433342 0.643994551 no Moderate 3.998854131 74 1 1 PB UC UC UC UC UC UC 4 3 1 0 1 0 1 0 0 3 0
UC172 Train IBD UC UC 1 3 150675-27 UC_FIT026CCAL FIT026CCAL 172 FIT026CCAL FIT026CCAL_BE5_01_51910.mzXML FIT026CCAL_BE5_01_50158.mzXML PLCL21066 Plate1 E5 42019 2 Echo550 IBD200 12675.FIT026CCAL 51 37 14 female Non-hispanic N 165.1 N 0 0 0 1 unk yes unk (10/2014) unk yes Hydrocortisone unk SR (10/2014) Sulfasal 2 g (2005-2014) Left Side Colites 0 0 none 0.1604 0.1604 SF Carmen_HOWE_KF3 4.3 7.3 86.5 270 0.444444444 0.4 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ no Moderate 1 unk UC UC UC UC UC UC 30 4 2 0 0 1 1 0 0 0 1 2
UC60 Train IBD UC UC 2 3 150675-218 UC_FIT306E3CAL FIT306E3CAL 60 FIT306E3CAL FIT306E3CAL_GE12_01_52060.mzXML FIT306E3CAL_GE12_01_50249.mzXML PLCL31913 Plate2 E12 42019 3 Echo550 IBD200 12675.FIT306E3CAL 50 26 24 male Caucasian N 177.8 N 0 0 0 1 unk yes 2.4 g PO 7/2016 unk yes Pred PO 1996 Left Side Colites 0 0 none 0.1238 0.1238 HG Carmen_HOWE_KF4 0.111111111 0.1 no Low 0 2 2 R UC UC UC UC UC UC 3 2 0 0 1 1 0 0 0 1 0
UC144 Test IBD UC UC 2 3 150675-240 UC_FIT209E3CAL FIT209E3CAL 144 FIT209E3CAL FIT209E3CAL_GG7_01_52082.mzXML FIT209E3CAL_GG7_01_50275.mzXML PLCL31212 Plate2 G7 42019 3 Echo550 IBD200 12675.FIT209E3CAL 81 43 38 male Caucasian N 188 N 0 0 0 1 unk yes Lialda 4.8 g PO 8/2017-pres unk yes Pred intermittent Sulfasalazine Pancolites 0 0 none 0.1483 0.1483 HG Carmen_HOWE_KF4 0.222222222 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__obeum 9.091223456 0.716836525 no Low 4.942457206 119 2 3 R UC UC UC UC UC UC 2 3 0 0 1 1 0 0 0 0 0
UC137 Test IBD UC UC 2 4 150675-127 UC_FIT102E3CAL FIT102E3CAL 137 FIT102E3CAL not applicable not applicable PLCL28216 not applicable not applicable 42019 2 Echo550 IBD200 12675.FIT102E3CAL 27 23 4 male Caucasian N 47.6 193 N 2 1 1 1 yes 150 mg PO QD (10/2016-pres) unk yes ADA 40 mg SQ (10/2016-pres) yes Pred tap. 40 mg PO QD (5/2016-9/2016) Balsalazide 4.5 g PO QD (7/2016-pres) Pancolites 1 3 AZA SF Carmen_HOWE_KF3 4.5 5.1 79.4 293 0.777777778 0.8 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__fragilis 8.175889381 0.42293893 yes High 2.634409915 75 2 1 to 2 RC--LC--R UC UC UC UC UC UC 35 7 3 0 0 1 1 1 2 1 3 2
UC139 Train IBD UC UC 2 4 150675-176 UC_FIT216E3CAL FIT216E3CAL 139 FIT216E3CAL FIT216E3CAL_GC11_01_52032.mzXML FIT216E3CAL_GC11_01_50219.mzXML PLCL31220 Plate2 C11 42019 2 Echo550 IBD200 12675.FIT216E3CAL 51 48 3 male African American N 188 Y 2 1 0 1 yes 200 mg PO 9/2016 yes Apriso yes IFX 5 mg/kg IV 5/2016-12/2016 q8wks yes Pred 40 mg PO 12/2016 for 2 weeks 2 3 AZA 0.1285 0.1285 SF Carmen_HOWE_KF3 0.666666667 0.7 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Dialister;s__ 8.806187175 0.627210642 no High 4.202587096 104 2 1 UC UC UC UC UC UC 6 2 0 0 1 1 1 1 1 3 1
UC193 Train IBD UC UC 2 4 150675-254 UC_FIT262E3CAL FIT262E3CAL 193 FIT262E3CAL FIT262E3CAL_BD5_01_52139.mzXML FIT262E3CAL_BD5_01_50337.mzXML unable to get Plate3 D5 42019 1 Echo550 IBD200 12675.FIT262E3CAL 22 19 3 male Caucasian N 182.9 Y 1 0 0 1 yes 200 mg PO 12/2017-1/2018 unk yes IFX 10 mg/kg IV q8wk 8/2017-10/2017 yes Pred 8/2017 taper Pancolites 1 2 none 0.1042 0.1042 HG Carmen_HOWE_KF2 0.8 4.3 10.8 15 0.444444444 0.4 8.867868133 0.541729365 no Moderate 3.599171995 100 2 1 LC--R UC UC UC UC UC UC 65.6 4 3 0 0 0 0 0 1 1 1 1
UC77 Train IBD UC UC 2 4 150675-260 UC_FIT269E3CAL FIT269E3CAL 77 FIT269E3CAL FIT269E3CAL_GC6_01_52027.mzXML FIT269E3CAL_GC6_01_50214.mzXML PLCL30474 Plate2 C6 42019 2 Echo550 IBD200 12675.FIT269E3CAL 58 30 28 male Caucasian N 182.9 N 0 0 0 1 unk yes 4.8 g PO 2007 unk yes Pred PO 1990 Sulfasalazine PO Pancolites 0 0 none 0.1356 0.1356 SF Carmen_HOWE_KF3 0.555555556 0.6 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__producta 9.941676676 0.709046921 no High 4.888749305 119 2 1 R UC UC UC UC UC UC 5 3 0 0 1 1 0 0 0 2 1
UC59 Train IBD UC UC 2 4 150675-265 UC_FIT238E3CAL FIT238E3CAL 59 FIT238E3CAL FIT238E3CAL_BE4_01_51909.mzXML FIT238E3CAL_BE4_01_50157.mzXML PLCL30278 Plate1 E4 42019 2 Echo550 IBD200 12675.FIT238E3CAL 62 58 4 female Caucasian N 159.4 N 0 0 1 1 unk unk yes IFX 5 mg/kg IV 11/2017-pres yes Uceris 9 mg PO 7/2017- 11/2017 Pancolites 0 0 none 0.0208 0.0208 SF Carmen_HOWE_KF3 0.888888889 0.9 9.709792247 0.698243638 no High 4.678539406 104 2 1 RC--LC--R UC UC UC UC UC UC 8 3 0 1 0 0 0 0 0 3 2
UC57 Test IBD UC UC 2 4 150675-323 UC_150675-323 150675.323 57 150675-323 150675_323_BF6_01_52168.mzXML 150675_323_BF6_01_50367.mzXML PLCL31916 Plate3 B10 42019 1 Echo550 IBD200 12675.150675.323 35 21 14 female Caucasian N 172.7 N 0 0 1 1 unk yes Canasa x6 months (2006-2007) unk yes Pred 40 mg taper over 10 wks PO (2018-2018) left side colites 0 0 none 0.0807 0.11 HG Carmen_HOWE_KF2 0.444444444 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 12.14926522 0.637070038 no Moderate 4.528627948 138 2 0 to 1 lc UC UC UC UC UC UC 4 2 0 0 1 1 0 0 0 1 1
UC7 Test IBD UC UC 2 5 150675-278 UC_FIT239E3CAL FIT239E3CAL 7 FIT239E3CAL FIT239E3CAL_BF12_01_52174.mzXML FIT239E3CAL_BF12_01_50373.mzXML none Plate3 F12 42019 1 Echo550 IBD200 12675.FIT239E3CAL 37 24 13 female Caucasian N 180.3 Y 4 0 0 1 yes Imuran unk dose 2006 unk yes IFX IV 2007 yes Pred 40/60/80 mg PO 2006-2009 Cimzia SQ 2011-2014 3 1 AZA 0.1173 0.1342 Colonic HG Carmen_HOWE_KF2 0.222222222 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 14.37058609 0.689606842 no Low 5.166433157 180 2 1 RC--LC--R UC UC UC UC UC UC 2 3 0 0 0 0 1 "1,2,3" 1 0 0
UC129 Train IBD UC UC 2 5 150675-280 UC_FIT310E3CAL FIT310E3CAL 129 FIT310E3CAL FIT310E3CAL_BF7_01_52169.mzXML FIT310E3CAL_BF7_01_50368.mzXML plcl32128 Plate3 F7 42019 1 Echo550 IBD200 12675.FIT310E3CAL 48 41 7 male Middle Eastern N 175.3 N 2 0 0 0 unk yes Mesalamine unk dose yes IFX 5 mg/kg IV 2013-6/2016 unk Proctitis 2 3 none 0.0751 0.1166 HG Carmen_HOWE_KF2 0.333333333 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__ 20.56999139 0.700553602 no Moderate 5.635529274 264 2 1 lc--r UC UC UC UC UC UC 3 1 0 0 1 0 0 1 1 0 1
UC12 Train IBD UC UC 2 5 150675-315 UC_FIT237E3CAL FIT237E3CAL 12 FIT237E3CAL FIT237E3CAL_GF5_01_52066.mzXML FIT237E3CAL_GF5_01_50256.mzXML not done Plate2 F5 42019 3 Echo550 IBD200 12675.FIT237E3CAL 24 15 9 male Caucasian N 162.6 Y 1 0 0 1 unk yes Lialda 3.6 h PO 2010; hair loss yes IFX 5 mg/kg IV 5/2013-11/2017 q8wks yes Pred 2010 6 months Solumedrol IV 2010; hospitalization Left Side Colites 1 2 MTX 0.17 0.17 HG Carmen_HOWE_KF4 0.444444444 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 12.48213241 0.688684557 no Moderate 5.073072349 165 2 1 to 2 LC UC UC UC UC UC UC 4 2 0 0 1 1 1 1 1 1 1
UC78 Train IBD UC UC 2 6 150675-213 UC_FIT260E3CAL FIT260E3CAL 78 FIT260E3CAL FIT260E3CAL_BB12_01_52120.mzXML FIT260E3CAL_BB12_01_50316.mzXML PLCL30124 Plate3 B12 42019 1 Echo550 IBD200 12675.FIT260E3CAL 44 39 5 male Caucasian N 89.4 188 N 1 0 1 1 unk yes Lialda PO 10/2016; d/c intolerant yes IFX 5mg/kg IV 8/2017-2018 yes Uceris PO 11/2016 Left Side Colites 0 0 6MP 0.1045 0.1228 HG Carmen_HOWE_KF2 4.4 5.1 87.7 301 0.222222222 0.2 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ 10.78022889 0.695220024 no Low 4.834696523 124 2 1 to 2 R UC UC UC UC UC UC 42 5 2 0 0 1 0 1 0 0 1 2
UC110 Test IBD UC UC 2 6 150675-303 UC_FIT289E3CAL FIT289E3CAL 110 FIT289E3CAL FIT289E3CAL_BC12_01_51888.mzXML FIT289E3CAL_BC12_01_50136.mzXML PLCL32541 Plate1 C12 42019 2 Echo550 IBD200 12675.FIT289E3CAL 23 17 6 male Caucasian N 177.8 N 7 0 0 1 unk yes lialda 4/2014; elevated liver enzymes yes ADA 40 mg SQ 9/2014-3/2015 QEOW yes Pred 4/2014 Xeljanz 10 mg BID 3/2017 Pancolites 2 7 MTX 0.1398 0.1398 SF Carmen_HOWE_KF3 0.333333333 0.3 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 12.14901069 0.599947582 no Moderate 4.165144787 123 2 0 to 1 rc-lc-r UC UC UC UC UC UC 3 3 0 0 1 0 1 "1,2,4" 1 1 0
UC177 Train IBD UC UC 3 3 150675-106 UC_FIT091E3CAL FIT091E3CAL 177 FIT091E3CAL FIT091E3CAL_BC5_01_51881.mzXML FIT091E3CAL_BC5_01_50129.mzXML PLCL26238 Plate1 C5 42019 2 Echo550 IBD200 12675.FIT091E3CAL 46 20 26 male Caucasian N 182.9 Y 3 1 0 1 yes 100 mg PO QD (2014-pres) yes Lialda 2.4 g PO QD (2003-2004) yes IFX 5 mg/kg IV (2004-unk) yes Pred unk dose (1993-1997) Sulfasalazine 4 tabs PO (1993-1997) Left Side Colites 2 5 AZA 0.1141 0.1141 SF Carmen_HOWE_KF3 0.555555556 0.6 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__prausnitzii 10.89960539 0.581832255 no High 4.032526533 122 3 unk LC--R UC UC UC UC UC UC 5 2 0 0 1 0 1 "1,3" 1 2 0
UC138 Train IBD UC UC 3 4 150675-36 UC_FIT236E3CAL FIT236E3CAL 138 FIT236E3CAL FIT236E3CAL_BD7_01_52141.mzXML FIT236E3CAL_BD7_01_50339.mzXML PLCL31490 Plate3 D7 42019 1 Echo550 IBD200 12675.FIT236E3CAL 94 26 68 male Middle Eastern N 172.7 Y 0 0 1 1 yes unk dose PO (1/2013-5/2013) yes unk dose PO (2003;2013) yes IFX unk dose IV (1/2013-5/2013) yes Betnesol unk dose topical (2003-2013) Tacrolimus unk dose PO (5/2013-10/2013) Left Side Colites 1 0 AZA 0.1415 0.1368 HG Carmen_HOWE_KF2 0.777777778 0.8 k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;__ 7.915465392 0.654479016 no High 4.183637616 84 3 1 R UC UC UC UC UC UC 6 2 0 0 1 1 1 "1,4,7" 0 3 0
UC203 Train IBD UC UC 3 5 150675-137 UC_FIT267E3CAL FIT267E3CAL 203 FIT267E3CAL FIT267E3CAL_GB7_01_52015.mzXML FIT267E3CAL_GB7_01_50201.mzXML PLCL30281 Plate2 B7 42019 2 Echo550 IBD200 12675.FIT267E3CAL 47 27 20 female Caucasian F 92 156.2 N 0 0 0 1 unk yes Asacol unk dose PO (unk-2006) yes IFX IV yes Pred unk dose PO (1999-2006; d/c intolerance) Sulfasalazine unk dose PO (1999; d/c intolerance) Pancolites 0 0 none 0.1796 0.1796 SF Carmen_HOWE_KF3 0.888888889 0.9 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;__ 10.71235562 0.70309479 no High 4.881245775 123 3 unk LC--R UC UC UC UC UC UC 8 3 0 0 1 1 0 0 0 3 2
UC8 Train IBD UC UC 3 5 150675-284 UC_FIT254E3CAL FIT254E3CAL 8 FIT254E3CAL FIT254E3CAL_BB7_01_52115.mzXML FIT254E3CAL_BB7_01_50311.mzXML PLCL30115 Plate3 B7 42019 1 Echo550 IBD200 12675.FIT254E3CAL 64 49 15 female Caucasian F 157.5 Y 0 0 0 1 yes 100 mg PO 2010 yes Canasa supp 2004-2013 yes IFX IV 2011-2013 unk Pancolites 1 0 AZA 0.0976 0.1193 HG Carmen_HOWE_KF2 0.777777778 0.8 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Gemmiger;s__formicilis 25.9765122 0.714922557 no High 5.968694081 326 3 1 R UC UC UC UC UC UC 7 3 0 1 1 1 1 1 0 2 2
UC111 Test IBD UC UC 3 6 150675-143 UC_FIT083E3CAL FIT083E3CAL 111 FIT083E3CAL FIT083E3CAL_GA10_01_52005.mzXML FIT083E3CAL_GA10_01_50187.mzXML Missing Plate2 A10 42019 2 Echo550 IBD200 12675.FIT083E3CAL 66 11 9 female Caucasian N 154.9 Y 0 0 0 1 unk yes Asacol 400 mg PO (5/2006-2/2013) unk yes Pred 5 mg PO (9/2016-pres) Tacrolimus 1 mg (9/2016-pres) 0 0 none 0.1436 0.1436 SF Carmen_HOWE_KF3 0.888888889 0.9 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 10.19827092 0.750673557 no High 5.175757373 119 3 2 UC UC UC UC UC UC 8 2 0 0 1 1 1 0 0 3 2
UC58 Test IBD UC UC 3 6 150675-319 UC_FIT291E3CAL FIT291E3CAL 58 FIT291E3CAL FIT291E3CAL_GF8_01_52069.mzXML FIT291E3CAL_GF8_01_50259.mzXML PLCL31906 Plate2 F8 42019 3 Echo550 IBD200 12675.FIT291E3CAL 30 16 14 female Caucasian N 165.1 Y 2 0 1 1 unk yes (2005-2012);s-beptimal compliance yes Remicade IV (2013-2016);lost response yes Pred 40 mg PO 2013;PRN for flares Pancolites 3 3 none 0.113 0.113 HG Carmen_HOWE_KF4 0.888888889 0.9 k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ 15.9358281 0.713611326 no High 5.56218344 222 3 1 to 2 lc--r- UC UC UC UC UC UC 8 3 0 0 1 0 0 "1,2,3" 1 3 2
UC85 Train IBD UC UC 3 7 150675-207 UC_FIT233E3CAL FIT233E3CAL 85 FIT233E3CAL FIT233E3CAL_GG9_01_52084.mzXML FIT233E3CAL_GG9_01_50277.mzXML PLCL31232 Plate2 G9 42019 3 Echo550 IBD200 12675.FIT233E3CAL 32 26 6 male Caucasian N 72.6 177.8 Y 1 1 0 1 yes 75 mg 8/2014-pres yes Asacol 4.8 g 5/2014 yes IFX 5 mg/kg IV 7/20/2016-5/26/2017 yes Pred tap. 60 mg 5/2014; ineff Imodium 11/2013 Pancolites 1 2 AZA 0.1331 0.1331 HG Carmen_HOWE_KF4 0.444444444 0.4 k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;__;__;__ 7.93168764 0.520909311 no Moderate 3.1015963 62 3 3 LC--R UC UC UC UC UC UC 7 3 0 1 1 1 1 1 1 3 1
UC79 Train IBD UC UC 3 7 150675-215 UC_FIT188E3CAL FIT188E3CAL 79 FIT188E3CAL FIT188E3CAL_GE6_01_52054.mzXML FIT188E3CAL_GE6_01_50243.mzXML PLCL31235 Plate2 E6 42019 3 Echo550 IBD200 12675.FIT188E3CAL 35 32 3 female Caucasian N 162.6 Y 1 1 0 1 yes 100 mg PO 5/2017-6/2017 yes Lialda 4.8 g PO yes ADA 40 mg SQ 3/2017-5/2017 yes Pred 8/2016 Left Side Colites 2 2 AZA 0.1317 0.1317 HG Carmen_HOWE_KF4 0.888888889 0.9 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia;s__muciniphila 12.15135766 0.574108889 no High 4.12204963 145 3 1 LC UC UC UC UC UC UC 8 2 0 0 1 0 1 2 1 3 2
UC33 Test IBD UC UC 150675-324 UC_150675-324 150675.324 33 150675-324 150675_324_BE6_01_52155.mzXML 150675_324_BE6_01_50353.mzXML not done Plate3 B11 42019 1 Echo550 IBD200 12675.150675.324 22 15 7 male Hispanic or Latino N 172.7 Y 4 0 unk yes Mesalamine enema q10w 03/2018 yes IFX IV unk dose 07/2014-07/2014 ineffective unk Pancolites NM 0.1226 0.1226 HG Carmen_HOWE_KF2 7.8 79.7 287 0.777777778 0.8 8.961845518 0.468975531 no High 3.005847515 85 3 1 to 2 LC-R UC UC UC UC UC UC 32 7 3