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whats-new-cadnano.html
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whats-new-cadnano.html
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Cadnano 2 is a complete rewrite of the software. Our main objectives for the release were to establish the new architecture, simplify the overall worklow and provide a more functional 3" />
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<div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even"><h1>What's new?</h1>
<p>Cadnano 2 is a complete rewrite of the software. Our main objectives for the release were to establish the new architecture, simplify the overall worklow and provide a more functional 3D view that will allow a 3D-centered design in future releases.</p>
<h3>Convenience 2D Enhancements</h3>
<ul><li>Undo/redo.</li>
<li>Unified interface for square-lattice and honeycomb-lattice parts. The new workflow is to open a document and then click the "Honeycomb" or "Square" button on the top toolbar to create a new part for editing.</li>
<li>Stored user preferences.</li>
<li>Scroll to zoom (e.g. via mousewheel). Command+mouse-drag to pan.</li>
<li>Pencil tool: Left-click to create or destroy staple or scaffold. Right-click to create a forced crossover.</li>
<li>DNA sequences are displayed live in the interface.</li>
<li>Export button: creates a staple csv file, replacing the old sequence tool copy-to-clipboard dialog.</li>
<li>Frame button: zoom-to-fit of path view.</li>
<li>Loop is renamed to Insert. Its size can be edited in place via its numeric label.</li>
<li>Multiple helices can be reordered by selecting the helix labels (leftmost orange circle) and dragging the group.</li>
<li>Delete-Last button removed. To delete a helix, selecting its label and press delete.</li>
</ul><h3>3D View</h3>
<ul><li>Interface embedded as a plug-in for Autodesk Maya.</li>
<li>Display both scaffold and staple strands.</li>
<li>Display modification positions. Click will select the position in 2D path view.</li>
</ul><h3>New Architecture</h3>
<ul><li>Complete re-write in Python/PyQt. Note: Installer includes <a href="http://qt.nokia.com/">Qt</a> and <a href="http://www.riverbankcomputing.co.uk/software/pyqt/intro">PyQt</a> libraries.</li>
<li>Significantly improved performance.</li>
<li>Model-view-controller architecture.</li>
<li>Documentation to extend Cadnano's functionality through plug-ins.</li>
<li><a href="https://github.com/sdouglas/cadnano2/">Source</a> on github.</li>
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<li><a href="https://cando-dna-origami.org/">CanDo</a></li>
<li><a href="https://gitlab.engr.illinois.edu/tbgl/tools/mrdna">MrDNA</a></li>
<li><a href="https://dna.physics.ox.ac.uk/index.php/Main_Page">oxDNA</a></li>
<li><a href="https://clarafi.com/tools/mmaya/">mMaya</a></li>
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