/
ensembl-vep-111-icelake.log
334 lines (259 loc) · 7.85 KB
/
ensembl-vep-111-icelake.log
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The FASTA file should be automatically detected by the VEP when using --cache or --offline.
If it is not, use "--fasta .vep/homo_sapiens_merged/111_GRCh37/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa"
- downloading Homo_sapiens.GRCh37.75.dna.primary_assembly.fa.gz
- extracting data
- attempting to index
Indexing failed - VEP will attempt to index the file the first time you use it
The FASTA file should be automatically detected by the VEP when using --cache or --offline.
If it is not, use "--fasta .vep/homo_sapiens/111_GRCh37/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa"
- installing "AlphaMissense"
- This plugin requires data
- See .vep/Plugins/AlphaMissense.pm for details
- OK
- installing "AncestralAllele"
- This plugin requires data
- See .vep/Plugins/AncestralAllele.pm for details
- OK
- installing "BayesDel"
- This plugin requires data
- See .vep/Plugins/BayesDel.pm for details
- OK
- installing "Blosum62"
- add "--plugin Blosum62" to your VEP command to use this plugin
- OK
- installing "CADD"
- This plugin requires data
- See .vep/Plugins/CADD.pm for details
- OK
- installing "CAPICE"
- This plugin requires data
- See .vep/Plugins/CAPICE.pm for details
- OK
- installing "CSN"
- add "--plugin CSN" to your VEP command to use this plugin
- OK
- installing "Carol"
- This plugin requires installation
- See .vep/Plugins/Carol.pm for details
- OK
- installing "ClinPred"
- This plugin requires data
- See .vep/Plugins/ClinPred.pm for details
- OK
- installing "Condel"
- This plugin requires installation
- See .vep/Plugins/Condel.pm for details
- OK
- installing "Conservation"
- add "--plugin Conservation,[options]" to your VEP command to use this plugin
- OK
- installing "DeNovo"
- add "--plugin DeNovo" to your VEP command to use this plugin
- OK
- installing "DisGeNET"
- add "--plugin DisGeNET" to your VEP command to use this plugin
- OK
- installing "DosageSensitivity"
- This plugin requires data
- See .vep/Plugins/DosageSensitivity.pm for details
- OK
- installing "Downstream"
- add "--plugin Downstream" to your VEP command to use this plugin
- OK
- installing "Draw"
- This plugin requires installation
- See .vep/Plugins/Draw.pm for details
- OK
- installing "EVE"
- This plugin requires data
- See .vep/Plugins/EVE.pm for details
- OK
- installing "Enformer"
- This plugin requires data
- See .vep/Plugins/Enformer.pm for details
- OK
- installing "FATHMM"
- add "--plugin FATHMM" to your VEP command to use this plugin
- OK
- installing "FATHMM_MKL"
- This plugin requires data
- See .vep/Plugins/FATHMM_MKL.pm for details
- OK
- installing "FlagLRG"
- add "--plugin FlagLRG" to your VEP command to use this plugin
- OK
- installing "FunMotifs"
- add "--plugin FunMotifs" to your VEP command to use this plugin
- OK
- installing "G2P"
- This plugin requires data
- See .vep/Plugins/G2P.pm for details
- OK
- installing "GO"
- add "--plugin GO,[options]" to your VEP command to use this plugin
- OK
- installing "GWAS"
- add "--plugin GWAS" to your VEP command to use this plugin
- OK
- installing "GeneSplicer"
- This plugin requires installation
- See .vep/Plugins/GeneSplicer.pm for details
- OK
- installing "Geno2MP"
- This plugin requires data
- See .vep/Plugins/Geno2MP.pm for details
- OK
- installing "Gwava"
- This plugin requires data
- See .vep/Plugins/Gwava.pm for details
- OK
- installing "HGVSIntronOffset"
- add "--plugin HGVSIntronOffset" to your VEP command to use this plugin
- OK
- installing "IntAct"
- This plugin requires data
- See .vep/Plugins/IntAct.pm for details
- OK
- installing "LD"
- add "--plugin LD,[options]" to your VEP command to use this plugin
- OK
- installing "LOEUF"
- This plugin requires data
- See .vep/Plugins/LOEUF.pm for details
- OK
- installing "LOVD"
- add "--plugin LOVD" to your VEP command to use this plugin
- OK
- installing "LoF"
- This plugin requires installation
- This plugin requires data
- See .vep/Plugins/LoF.pm for details
- OK
- installing "LoFtool"
- This plugin requires data
- See .vep/Plugins/LoFtool.pm for details
- OK
- installing "LocalID"
- add "--plugin LocalID" to your VEP command to use this plugin
- OK
- installing "MPC"
- This plugin requires data
- See .vep/Plugins/MPC.pm for details
- OK
- installing "MTR"
- This plugin requires data
- See .vep/Plugins/MTR.pm for details
- OK
- installing "Mastermind"
- add "--plugin Mastermind" to your VEP command to use this plugin
- OK
- installing "MaveDB"
- This plugin requires data
- See .vep/Plugins/MaveDB.pm for details
- OK
- installing "MaxEntScan"
- This plugin requires installation
- See .vep/Plugins/MaxEntScan.pm for details
- OK
- installing "NMD"
- add "--plugin NMD" to your VEP command to use this plugin
- OK
- installing "NearestExonJB"
- add "--plugin NearestExonJB" to your VEP command to use this plugin
- OK
- installing "NearestGene"
- add "--plugin NearestGene" to your VEP command to use this plugin
- OK
- installing "OpenTargets"
- This plugin requires data
- See .vep/Plugins/OpenTargets.pm for details
- OK
- installing "PON_P2"
- add "--plugin PON_P2" to your VEP command to use this plugin
- OK
- installing "Phenotypes"
- This plugin requires data
- See .vep/Plugins/Phenotypes.pm for details
- OK
- installing "PostGAP"
- add "--plugin PostGAP" to your VEP command to use this plugin
- OK
- installing "PrimateAI"
- This plugin requires data
- See .vep/Plugins/PrimateAI.pm for details
- OK
- installing "ProteinSeqs"
- add "--plugin ProteinSeqs" to your VEP command to use this plugin
- OK
- installing "REVEL"
- This plugin requires data
- See .vep/Plugins/REVEL.pm for details
- OK
- installing "ReferenceQuality"
- add "--plugin ReferenceQuality" to your VEP command to use this plugin
- OK
- installing "SameCodon"
- add "--plugin SameCodon" to your VEP command to use this plugin
- OK
- installing "SingleLetterAA"
- add "--plugin SingleLetterAA" to your VEP command to use this plugin
- OK
- installing "SpliceAI"
- add "--plugin SpliceAI" to your VEP command to use this plugin
- OK
- installing "SpliceRegion"
- add "--plugin SpliceRegion" to your VEP command to use this plugin
- OK
- installing "SpliceVault"
- add "--plugin SpliceVault" to your VEP command to use this plugin
- OK
- installing "StructuralVariantOverlap"
- add "--plugin StructuralVariantOverlap" to your VEP command to use this plugin
- OK
- installing "SubsetVCF"
- add "--plugin SubsetVCF" to your VEP command to use this plugin
- OK
- installing "TSSDistance"
- add "--plugin TSSDistance" to your VEP command to use this plugin
- OK
- installing "TranscriptAnnotator"
- add "--plugin TranscriptAnnotator" to your VEP command to use this plugin
- OK
- installing "UTRAnnotator"
- add "--plugin UTRAnnotator" to your VEP command to use this plugin
- OK
- installing "VARITY"
- This plugin requires data
- See .vep/Plugins/VARITY.pm for details
- OK
- installing "dbNSFP"
- This plugin requires installation
- This plugin requires data
- See .vep/Plugins/dbNSFP.pm for details
- OK
- installing "dbscSNV"
- This plugin requires installation
- This plugin requires data
- See .vep/Plugins/dbscSNV.pm for details
- OK
- installing "gnomADc"
- This plugin requires data
- See .vep/Plugins/gnomADc.pm for details
- OK
- installing "mutfunc"
- This plugin requires data
- See .vep/Plugins/mutfunc.pm for details
- OK
- installing "neXtProt"
- This plugin requires data
- See .vep/Plugins/neXtProt.pm for details
- OK
- installing "pLI"
- This plugin requires data
- See .vep/Plugins/pLI.pm for details
- OK
- installing "satMutMPRA"
- add "--plugin satMutMPRA" to your VEP command to use this plugin
- OK
NB: One or more plugins that you have installed will not work without installation or downloading data; see logs above
All done