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The project has moved! Please use: https://github.com/JuliaHelmecke/bacdive-api

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BacDivePy

A python interface for the Bacterial Diversity Metadatabase (Söhngen et al. 2014 & 2016) of the DSMZ (German Collection of Microorganisms and Cell Cultures). BacDivePy is modeled after BacDiveR

Installation

For the latest stable version

pip install bacdive

or for the latest dev. version

pip install git+https://github.com/cameronmartino/BacDivePy.git

Tutorials

References

  • Söhngen, Carola, Boyke Bunk, Adam Podstawka, Dorothea Gleim, and Jörg Overmann. 2014. “BacDive—the Bacterial Diversity Metadatabase.” Nucleic Acids Research 42 (D1): D592–D599. doi:10.1093/nar/gkt1058.

  • Söhngen, Carola, Adam Podstawka, Boyke Bunk, Dorothea Gleim, Anna Vetcininova, Lorenz Christian Reimer, Christian Ebeling, Cezar Pendarovski, and Jörg Overmann. 2016. “BacDive – the Bacterial Diversity Metadatabase in 2016.” Nucleic Acids Research 44 (D1): D581–D585. doi:10.1093/nar/gkv983.

  • BacDiveR