[Matlab] Update to reflect removal of CTI/XML input formts

interfaces/matlab_experimental/1D/Domain1D.m

@@ -23,7 +23,6 @@
             %    `Symm1D`
             %    `Outlet1D`
             %    `ReactingSurface`
-            %    `Sim1D`
             %    `OutletRes`
             %
             % :param b:

interfaces/matlab_experimental/Base/Interface.m

@@ -11,14 +11,13 @@
         function s = Interface(src, id, p1, p2, p3, p4)
             % INTERFACE  Interface class constructor.
             % s = Interface(src, id, p1, p2, p3, p4)
-            % See `Interfaces <https://cantera.org/tutorials/cti/phases.html#interfaces>`__.
             %
             % See also: :mat:func:`importEdge`, :mat:func:`importInterface`
             %
             % :param src:
-            %     CTI or CTML file containing the interface or edge phase.
+            %     YAML file containing the interface or edge phase.
             % :param id:
-            %     Name of the interface or edge phase in the CTI or CTML file.
+            %     Name of the interface or edge phase in the YAML file.
             % :param p1:
             %     Adjoining phase to the interface.
             % :param p2:

interfaces/matlab_experimental/Base/Kinetics.m

@@ -289,20 +289,6 @@ function kinClear(kin)
             q = pt.Value;
         end
 
-        function q = rop(kin)
-            % Get the forward and reverse rates of progress.
-            %
-            % :return:
-            %    An I x 2 array of reaction rates of progress, where I is
-            %    the number of reactions. The first column contains the
-            %    forward rates of progress, and the second column the
-            %    reverse rates.
-
-            f = rop_f(kin);
-            r = rop_r(kin);
-            q = [f, r];
-        end
-
         function q = ropNet(kin)
             % Get the net rates of progress for all reactions.
             %

interfaces/matlab_experimental/Base/Solution.m

@@ -31,7 +31,7 @@
             % in the input file. To specify the transport modeling, set the input
             % argument ``trans`` to one of ``'default'``, ``'None'``, ``'Mix'``, or ``'Multi'``.
             % In this case, the phase name must be specified as well. Alternatively,
-            % change the ``transport`` node in the CTML file, or ``transport``
+            % change the ``transport`` node in the YAML file, or ``transport``
             % property in the CTI file before loading the phase. The transport
             % modeling cannot be changed once the phase is loaded.
             %
@@ -45,10 +45,10 @@
             % See also: :mat:func:`ThermoPhase`, :mat:func:`Kinetics`, :mat:func:`Transport`
             %
             % :param src:
-            %     Input string of CTI or CTML file name.
+            %     Input string of YAML file name.
             % :param id:
             %     Optional unless ``trans`` is specified. ID of the phase to
-            %     import as specified in the CTML or CTI file.
+            %     import as specified in the YAML file.
             % :param trans:
             %     String, transport modeling. Possible values are ``'default'``, ``'None'``,
             %     ``'Mix'``, or ``'Multi'``. If not specified, ``'default'`` is used.

interfaces/matlab_experimental/Base/ThermoPhase.m

@@ -456,7 +456,7 @@ function tpClear(tp)
                     for j = 1:n
                         k(i, j) = calllib(ct, 'thermo_speciesIndex', ...
                                           tp.tpID, name{i, j}) + 1;
-                        if k(i, j) > 1e3
+                        if k(i, j) > 1e6
                             warning(['Species ', name{i, j}, ...
                                    ' does not exist in the phase']);
                             k(i, j) = -1;
@@ -466,7 +466,7 @@ function tpClear(tp)
             elseif ischar(name)
                 k = calllib(ct, 'thermo_speciesIndex', ...
                             tp.tpID, name) + 1;
-                if k > 1e3
+                if k > 1e6
                     warning(['Species ', name, ...
                            ' does not exist in the phase.']);
                     k = -1;

interfaces/matlab_experimental/Phases/importEdge.m

@@ -2,7 +2,6 @@
     % Import edges between phases.
     % s = importEdge(file, name, phase1, phase2, phase3, phase4)
     % Supports up to four neighbor phases. See
-    % `Interfaces <https://cantera.org/tutorials/cti/phases.html#interfaces>`__
     %
     % :param file:
     %     File containing phases

interfaces/matlab_experimental/Phases/importInterface.m

@@ -1,10 +1,9 @@
 function s = importInterface(file, name, phase1, phase2)
     % Import an interface between phases.
     % s = importInterface(file, name, phase1, phase2)
-    % See `Interfaces <https://cantera.org/tutorials/cti/phases.html#interfaces>`__.
     %
     % :param file:
-    %     CTI or CTML file containing the interface
+    %     YAML file containing the interface
     % :param name:
     %     Name of the interface to import
     % :param phase1:

interfaces/matlab_experimental/Utility/LoadCantera.m

@@ -16,8 +16,7 @@
                                    'addheader','ct','addheader','ctfunc', ...
                                    'addheader','ctmultiphase','addheader', ...
                                    'ctonedim','addheader','ctreactor', ...
-                                   'addheader','ctrpath','addheader','ctsurf', ...
-                                   'addheader','ctxml');
+                                   'addheader','ctrpath','addheader','ctsurf');
     end
     disp('Cantera is ready for use');
 end