[Doc] Update citations for some transport classes

doc/doxygen/cantera.bib

@@ -20,6 +20,16 @@ @article{chiflikian1995
     url = {https://dx.doi.org/10.1063/1.871019},
     volume = {2},
     year = {1995}}
+@article{dixon-lewis1968,
+    author = {G.~Dixon-Lewis},
+    title = {Flame structure and flame reaction kinetics II. Transport phenomena in multicomponent systems},
+    journal = {Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences},
+    volume = {307},
+    number = {1488},
+    pages = {111--135},
+    year = {1968},
+    doi = {10.1098/rspa.1968.0178},
+    URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rspa.1968.0178}}
 @techreport{RADCAL,
     author = {W.~L.~Grosshandler},
     institution = {National Institute of Standards and Technology},
@@ -62,18 +72,18 @@ @article{han2015
     volume = {19},
     year = {2015}}
 @book{kee2003,
-	author = {R.~J.~Kee and M.~E.~Coltrin and P.~Glarborg},
-	publisher = {John Wiley & Sons},
-	title = {Chemically Reacting Flow: Theory and Practice},
-	year = {2003}}
+    author = {R.~J.~Kee and M.~E.~Coltrin and P.~Glarborg},
+    publisher = {John Wiley & Sons},
+    title = {Chemically Reacting Flow: Theory and Practice},
+    year = {2003}}
 @book{kee2017,
-	author = {R.~J.~Kee and M.~E.~Coltrin and P.~Glarborg and H.~Zhu},
-	publisher = {John Wiley & Sons},
-	title = {Chemically Reacting Flow: Theory and Practice},
+    author = {R.~J.~Kee and M.~E.~Coltrin and P.~Glarborg and H.~Zhu},
+    publisher = {John Wiley & Sons},
+    title = {Chemically Reacting Flow: Theory and Practice},
     edition = {2nd},
     doi = {10.1002/9781119186304},
     url = {https://dx.doi.org/10.1002/9781119186304},
-	year = {2017}}
+    year = {2017}}
 @article{khalilpour2020,
     author = {H.~Khalilpour and G.~Foroutan},
     journal = {Journal of Plasma Physics},
@@ -131,13 +141,34 @@ @software{BOLOS
     author = {A.~Luque},
     title = {{BOLOS}: {BOL}tzmann equation solver {O}pen {S}ource library},
     url = {https://github.com/aluque/bolos}}
+@article{marrero1972,
+    title = {Gaseous diffusion coefficients},
+    author = {T.~R.~Marrero and E.~A.~Mason},
+    journal = {Journal of Physical and Chemical Reference Data},
+    volume = {1},
+    number = {1},
+    pages = {3--118},
+    doi = {10.1063/1.3253094},
+    url = {https://doi.org/10.1063/1.3253094},
+    year = {1972}}
 @article{mason1983,
     author = {E.~A.~Mason and A.~P.~Malinauskas},
     journal = {Chemical Engineering Monographs},
     number = {17},
     publisher = {Elsevier},
     title = {Gas Transport in Porous Media: the Dusty-Gas Model},
     year = {1983}}
+@article{monchick1961,
+    author = {L.~Monchick and E.~A.~Mason},
+    title = "{Transport Properties of Polar Gases}",
+    journal = {The Journal of Chemical Physics},
+    volume = {35},
+    number = {5},
+    pages = {1676-1697},
+    year = {1961},
+    month = {11},
+    doi = {10.1063/1.1732130},
+    url = {https://doi.org/10.1063/1.1732130}}
 @article{niemeyer2017,
     author = {K.~E.~Niemeyer and N.~J.~Curtis and C.-J.~Sung},
     journal = {Journal of Computational Science},
@@ -159,6 +190,14 @@ @article{perini2012
     url = {https://dx.doi.org/10.1021/ef300747n},
     volume = {26},
     year = {2012}}
+@book{poling2001,
+    author = {B.~E.~Poling and J.~M.~Prausnitz and J.~P.~O'Connell},
+    title = {The Properties of Gases and Liquids},
+    publisher = {McGraw-Hill},
+    address = {New York},
+    isbn = {0-07-149999-7},
+    year = {2001},
+    edition = {Fifth}}
 @phdthesis{prager2005,
     author = {J.~Prager},
     school = {Technische Universität Darmstadt},
@@ -205,6 +244,16 @@ @book{smith1982
     isbn = {978-0471093473},
     title = {Chemical Reaction Equilibrium Analysis: Theory and Algorithms},
     year = {1982}}
+@article{takahashi1975,
+    author = {S.~Takahashi},
+    title = {Preparation of a Generalized Chart for the Diffusion Coefficients of Gases at High Pressures},
+    journal = {Journal of Chemical Engineering of Japan},
+    volume = {7},
+    number = {6},
+    pages = {417--420},
+    doi = {10.1252/jcej.7.417},
+    url = {https://doi.org/10.1252/jcej.7.417},
+    year = {1975}}
 @article{tsang1991,
     author = {W.~Tsang and J.~T.~Herron},
     journal = {Journal of Physical and Chemical Reference Data},

include/cantera/transport/GasTransport.h

@@ -167,7 +167,7 @@ class GasTransport : public Transport
      * Updates the array of pure species viscosities, and the weighting
      * functions in the viscosity mixture rule. The flag m_visc_ok is set to true.
      *
-     * The formula for the weighting function is from Poling and Prausnitz,
+     * The formula for the weighting function is from Poling et al. @cite poling2001,
      * Eq. (9-5.14):
      *  @f[
      *      \phi_{ij} = \frac{ \left[ 1 + \left( \mu_i / \mu_j \right)^{1/2} \left( M_j / M_i \right)^{1/4} \right]^2 }
@@ -196,7 +196,7 @@ class GasTransport : public Transport
     virtual void setupCollisionParameters();
 
     //! Setup range for polynomial fits to collision integrals of
-    //! Monchick & Mason
+    //! Monchick & Mason @cite monchick1961
     void setupCollisionIntegral();
 
     //! Read the transport database
@@ -209,10 +209,9 @@ class GasTransport : public Transport
 
     //! Corrections for polar-nonpolar binary diffusion coefficients
     /*!
-     * Calculate corrections to the well depth parameter and the diameter for
-     * use in computing the binary diffusion coefficient of polar-nonpolar
-     * pairs. For more information about this correction, see Dixon-Lewis, Proc.
-     * Royal Society (1968).
+     * Calculate corrections to the well depth parameter and the diameter for use in
+     * computing the binary diffusion coefficient of polar-nonpolar pairs. For more
+     * information about this correction, see Dixon-Lewis @cite dixon-lewis1968.
      *
      * @param i        Species one - this is a bimolecular correction routine
      * @param j        species two - this is a bimolecular correction routine
@@ -276,7 +275,7 @@ class GasTransport : public Transport
      * d(j,k). This method computes the multiplier by which the first-order
      * binary diffusion coefficient should be multiplied to produce the value
      * correct to second order. The expressions here are taken from Marerro and
-     * Mason, J. Phys. Chem. Ref. Data, vol. 1, p. 3 (1972).
+     * Mason @cite marrero1972.
      *
      * @param t   Temperature (K)
      * @param integrals interpolator for the collision integrals

include/cantera/transport/HighPressureGasTransport.h

@@ -28,10 +28,12 @@ namespace Cantera
  *     future version of  %Cantera. See
  *     https://github.com/Cantera/cantera/issues/267 for additional information.
  *
- * The implementation employs a method of corresponding states, using the
- * Takahashi approach for binary diffusion coefficients, (using multicomponent
- * averaging rules for the mixture properties, and the Lucas method for the
- * viscosity of a high-pressure gas mixture.
+ * The implementation employs a method of corresponding states, using the Takahashi
+ * @cite takahashi1975 approach for binary diffusion coefficients (using multicomponent
+ * averaging rules for the mixture properties), and the Lucas method for the viscosity
+ * of a high-pressure gas mixture. All methods are described in Poling et al.
+ * @cite poling2001 (viscosity in Ch. 9, thermal conductivity in Ch. 10, and diffusion
+ * coefficients in Ch. 11).
  *
  * @ingroup tranprops
  */

include/cantera/transport/MultiTransport.h

@@ -37,11 +37,11 @@ class MultiTransport : public GasTransport
 
     //! Return the thermal diffusion coefficients (kg/m/s)
     /*!
-     * Eqn. (12.126) displays how they are calculated. The reference work is
-     * from Dixon-Lewis.
+     * Eqn. (12.126) of Kee et al. @cite kee2003 displays how they are calculated. The
+     * reference work is from Dixon-Lewis @cite dixon-lewis1968.
      *
-     * Eqns. (12.168) shows how they are used in an expression for the species
-     * flux.
+     * Eqns. (12.168) of Kee et al. @cite kee2003 shows how they are used in an
+     * expression for the species flux.
      *
      * @param dt  Vector of thermal diffusion coefficients. Units = kg/m/s
      */

src/transport/GasTransport.cpp

@@ -88,7 +88,7 @@ void GasTransport::updateViscosity_T()
         updateSpeciesViscosities();
     }
 
-    // see Eq. (9-5.15) of Reid, Prausnitz, and Poling
+    // see Eq. (9-5.14) of Poling et al. (2001)
     for (size_t j = 0; j < m_nsp; j++) {
         for (size_t k = j; k < m_nsp; k++) {
             double vratiokj = m_visc[k]/m_visc[j];

src/transport/HighPressureGasTransport.cpp

@@ -1,13 +1,6 @@
 /**
  *  @file HighPressureGasTransport.cpp
  *  Implementation file for class HighPressureGasTransport
- *
- *  Transport parameters are calculated using corresponding states models:
- *      Binary diffusion coefficients use the generalized chart described by
- *      Takahashi, et al. and viscosity calculations use the Lucas method.
- *      All methods are described in Reid, Prausnitz, and Polling, "The Properties
- *      of Gases and Liquids, 4th ed., 1987 (viscosity in Ch. 9, Thermal
- *      conductivity in Ch. 10, and Diffusion coefficients in Ch. 11).
  **/
 
 // This file is part of Cantera. See License.txt in the top-level directory or

src/transport/MMCollisionInt.h

@@ -1,6 +1,6 @@
 /**
  * @file MMCollisionInt.h
- *  Monk and Monchick collision integrals
+ *  Monchick and Mason collision integrals
  */
 
 // This file is part of Cantera. See License.txt in the top-level directory or
@@ -17,8 +17,7 @@ namespace Cantera
 //! Calculation of Collision integrals
 /*!
  * This class provides functions that interpolate the tabulated collision
- * integrals in Monchick and Mason, "Transport Properties of Polar Gases," J.
- * Chem. Phys. (1961)
+ * integrals in Monchick and Mason @cite monchick1961.
  *
  * @ingroup tranprops
  */