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DESCRIPTION
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DESCRIPTION
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Package: ChIC
Title: Quality Control Pipeline for ChIP-Seq Data
Version: 1.11.1
Author: Carmen Maria Livi
Maintainer: Carmen Maria Livi <carmen.livi@external.ifom.eu>
Description: Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Imports:
ChIC.data (>= 1.11.1), caTools, methods, GenomicRanges, IRanges, parallel, progress, randomForest,
caret, grDevices, stats, utils, graphics, S4Vectors, BiocGenerics, genomeIntervals, Rsamtools
Depends: spp, R (>= 3.6)
biocViews: ChIPSeq, QualityControl
RoxygenNote: 7.1.1