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Expand Snakemake material #99

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jhidding opened this issue May 23, 2022 · 1 comment
Open

Expand Snakemake material #99

jhidding opened this issue May 23, 2022 · 1 comment

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@jhidding
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Currently (without the cosmology example) the Snakemake part is a bit thin. We should at least explain wildcards and the expand function.

@ocaisa
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ocaisa commented Jun 17, 2022

There are couple of lesson in the incubator already that cover snakemake in quite a bit of detail:
https://github.com/carpentries-incubator/hpc-workflows (recent fork on which we, HPC Carpentry, plan further development)
https://github.com/carpentries-incubator/workflows-snakemake (origin of HPC Carpentry fork, last commit almost 2 years ago)
https://github.com/carpentries-incubator/snakemake-novice-bioinformatics/ (active)

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