[REV]:

[nselem]

Thank you for your interest in submitting your lesson for review in The Carpentries Lab!
Please respond to the prompts below to complete your submission.
Check boxes by adding an 'x' between the square brackets at the start of each point,
or submit the issue and check off the boxes afterwards.

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1. What is the title of the lesson?
   Metagenomics Workshop Overview

2. Provide URLs to

   • The lesson repository:
     https://github.com/carpentries-incubator/metagenomics-workshop

   • The lesson homepage:
     https://carpentries-incubator.github.io/metagenomics-workshop/

3. Briefly describe the lesson (50 words or fewer).
   What does it aim to teach and to whom?
   This workshop teaches data management and analysis for metagenomics research, including best practices for organizing bioinformatics projects and data and connecting to and using cloud computing. It also provides experience using command-line utilities and tools to analyze sequence quality and R studio and R libraries to compare diversity between samples.

4. If you are submitting this lesson for review on behalf
   of multiple authors, list the GitHub usernames below for
   all authors who should receive notifications relating to the review.
   AbrahamAvelar, aaronejaime, fabel134, Vanessaarfer, Czirion, Bedxxe, nselem, BwanyaBrian, EdderDaniel, ahmedmoustafa

5. Provide URLs to workshop webpages and/or an issue
   on the lesson repository from any beta pilots of the lesson.
   (A beta pilot is a workshop where the lesson was taught
   by any instructor who was not part of the lesson development team
   before the pilot took place.)
   Alpha workshop https://betterlabmx.github.io/2020-11-27-BetterLab/
   First beta pilot https://czirion.github.io/2021-06-30-BetterLab-online/
   The second beta pilot was a course in a University, Here we provide the letter of the University to the professor: Guanajuato University Letter

6. (Optional) If you have obtained a DOI for the lesson via Zenodo,
   paste that DOI below.
   10.5281/zenodo.4285901

7. If the lesson is similar in topic to any other lesson
   already included in The Carpentries Lab and/or
   The Carpentries Lesson Programs (Software, Library, and Data Carpentry), briefly describe how this lesson differs and why a separate lesson was developed.
   This workshop is a curriculum that comprises four lessons. The first two lessons are adapted to metagenomics from the Genomics’ Data Carpentry. The third part includes a brief introduction to R, and the fourth lesson teaches a complete shotgun metagenomics workflow using public data which was not previously included in The Carpentrie’s lessons but it is a topic of interest to the biological community.

8. Check the boxes to confirm that the lesson

   • [x ] is the the original work of the author(s),
     or that any content derived from another source is reused with permission and appropriate attribution.
   • [x ] aligns with The Carpentries Code of Conduct.
   • [x ] is published under a CC-BY or CC0 license.
   • [x ] uses The Carpentries lesson template without significant customisation/adaptation.

9. If you wish to submit the lesson for publication in
   the Journal of Open Source Education (JOSE):
   (see the repository README for more details):

   • [x ] check the box to confirm that your repository includes
     paper.md and paper.bib files as described in
     the JOSE submission guide for learning modules.