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environment.yml
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environment.yml
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name: environment
channels:
- conda-forge
- bioconda
- defaults
- AgBiome
- R
dependencies:
- aioeasywebdav=2.4.0=py37_1000
- aiohttp=3.6.2=py37h0b31af3_0
- appdirs=1.4.3=py_1
- async-timeout=3.0.1=py_1000
- attrs=19.3.0=py_0
- bbmap=38.79=h01d97ff_0
- bcftools=1.9=h16e57c4_9
- bcrypt=3.1.7=py37h0b31af3_0
- bedtools=2.29.2=h37cfd92_0
- boto3=1.12.28=pyh9f0ad1d_0
- botocore=1.15.28=pyh9f0ad1d_0
- bowtie2=2.3.5.1=py37h2dec4b4_0
- bwa=0.7.17=h2573ce8_7
- bzip2=1.0.8=h0b31af3_2
- ca-certificates=2020.1.1=0
- cachetools=3.1.1=py_0
- cairo=1.16.0=hec6a9b0_1003
- certifi=2019.11.28=py37hc8dfbb8_1
- cffi=1.14.0=py37h356ff06_0
- chardet=3.0.4=py37hc8dfbb8_1006
- click=7.1.1=pyh8c360ce_0
- colormath=3.0.0=py_2
- configargparse=1.1=pyh8c360ce_0
- crc32c=2.0=py37h0b31af3_0
- cryptography=2.8=py37he655712_2
- curl=7.69.1=ha441bb4_0
- cycler=0.10.0=py_2
- datrie=0.8=py37h01d97ff_0
- decorator=4.4.2=py_0
- docutils=0.15.2=py37_0
- dropbox=9.4.0=py_0
- expat=2.2.9=h4a8c4bd_2
- fastqc=0.11.8=2
- fftw=3.3.8=nompi_h44ae4c8_1110
- filechunkio=1.8=py_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=2.001=hab24e00_0
- font-ttf-source-code-pro=2.030=hab24e00_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=h6b1039f_1001
- fonts-conda-forge=1=0
- freetype=2.10.1=h8da9a1a_0
- fribidi=1.0.9=h0b31af3_0
- ftputil=3.4=py_0
- future=0.18.2=py37hc8dfbb8_1
- gatk4=4.1.4.1=1
- gdk-pixbuf=2.38.2=h306395f_0
- gettext=0.19.8.1=h46ab8bc_1002
- ghostscript=9.22=h0a44026_1001
- giflib=5.2.1=h0b31af3_2
- gitdb=4.0.2=py_0
- gitpython=3.1.0=py_0
- glib=2.63.1=hd977a24_0
- gobject-introspection=1.58.2=py37hed9d58a_1004
- google-api-core=1.16.0=py37_1
- google-auth=1.11.2=py_0
- google-cloud-core=1.3.0=py_0
- google-cloud-storage=1.26.0=py_0
- google-resumable-media=0.5.0=py_1
- googleapis-common-protos=1.51.0=py37_1
- graphite2=1.3.13=h12caacf_1001
- graphviz=2.42.3=h98dfb87_0
- gsl=2.5=ha2d443c_1
- harfbuzz=2.4.0=hd8d2a14_3
- htslib=1.9=h356306b_9
- icu=64.2=h6de7cb9_1
- idna=2.9=py_1
- imagemagick=7.0.10_2=pl526h1de7979_0
- importlib-metadata=1.5.0=py37hc8dfbb8_1
- importlib_metadata=1.5.0=1
- ipython_genutils=0.2.0=py_1
- java-jdk=8.0.92=1
- jbig=2.1=h1de35cc_2001
- jinja2=2.11.1=py_0
- jmespath=0.9.5=py_0
- jpeg=9c=h1de35cc_1001
- jsonschema=3.2.0=py37hc8dfbb8_1
- jupyter_core=4.6.3=py37hc8dfbb8_1
- kiwisolver=1.1.0=py37ha1cc60f_1
- krb5=1.17.1=h1752a42_0
- libblas=3.8.0=16_openblas
- libcblas=3.8.0=16_openblas
- libcroco=0.6.13=hc484408_0
- libcurl=7.69.1=h051b688_0
- libcxx=9.0.1=1
- libdeflate=1.3=h01d97ff_0
- libedit=3.1.20181209=hb402a30_0
- libffi=3.2.1=h4a8c4bd_1007
- libgd=2.2.5=hfc178f3_1007
- libgfortran=4.0.0=2
- libiconv=1.15=h0b31af3_1006
- liblapack=3.8.0=16_openblas
- libopenblas=0.3.9=h3d69b6c_0
- libpng=1.6.37=hbbe82c9_1
- libprotobuf=3.11.4=hd174df1_0
- librsvg=2.46.4=h1ccd86b_1
- libssh2=1.9.0=ha12b0ac_1
- libtiff=4.1.0=ha78913b_3
- libwebp=1.0.2=hd3bf737_5
- libxcb=1.13=h1de35cc_1002
- libxml2=2.9.10=h53d96d6_0
- llvm-openmp=9.0.1=h28b9765_2
- lz4-c=1.8.3=h6de7cb9_1001
- lzstring=1.0.4=py_1001
- markdown=3.2.1=py_0
- markupsafe=1.1.1=py37h9bfed18_1
- matplotlib=3.2.1=0
- matplotlib-base=3.2.1=py37hddda452_0
- multidict=4.7.5=py37h0b31af3_0
- multiqc=1.7=py_4
- nbformat=5.0.4=py_0
- ncurses=6.1=h0a44026_1002
- networkx=2.4=py_1
- numpy=1.18.1=py37h7687784_1
- openjdk=8.0.192=h0b31af3_1004
- openjpeg=2.3.1=h254dc36_3
- openssl=1.1.1e=h0b31af3_0
- pandas=1.0.3=py37h94625e5_0
- pango=1.42.4=haa940fe_2
- paramiko=2.7.1=py37_0
- pcre=8.44=h4a8c4bd_0
- perl=5.26.2=haec8ef5_1006
- perl-gd=2.71=pl526h5c9b4e4_0
- picard=2.9.2=2
- pip=20.0.2=py_2
- pixman=0.38.0=h01d97ff_1003
- pkg-config=0.29.2=hdc84dc8_1006
- prettytable=0.7.2=py_3
- protobuf=3.11.4=py37h4a8c4bd_0
- psutil=5.7.0=py37h9bfed18_1
- pthread-stubs=0.4=h1de35cc_1001
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.20=py_0
- pygments=2.6.1=py_0
- pygraphviz=1.3=py37h1de35cc_1
- pynacl=1.3.0=py37h0b31af3_1001
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.6=py_0
- pyrsistent=0.15.7=py37h9bfed18_1
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py37hc8dfbb8_1
- python=3.7.6=hfa4aa89_4_cpython
- python-dateutil=2.8.1=py_0
- python-irodsclient=0.8.2=py_0
- python_abi=3.7=1_cp37m
- pytz=2019.3=py_0
- pyyaml=5.3.1=py37h9bfed18_0
- qualimap=2.2.2a=1
- ratelimiter=1.2.0=py37_1000
- readline=8.0=h1de35cc_0
- requests=2.23.0=pyh8c360ce_2
- rsa=4.0=py_0
- s3transfer=0.3.3=py37_0
- samtools=1.9=h8aa4d43_12
- setuptools=46.1.1=py37hc8dfbb8_0
- simplejson=3.17.0=py37h0b31af3_0
- six=1.14.0=py_1
- smmap=3.0.1=py_0
- snakemake=5.12.3=0
- snakemake-minimal=5.12.3=py_0
- spectra=0.0.11=py_1
- sqlite=3.31.1=ha441bb4_0
- tbb=2020.0=h04f5b5a_0
- tk=8.6.10=hbbe82c9_0
- toposort=1.5=py_3
- tornado=6.0.4=py37h9bfed18_1
- traitlets=4.3.3=py37hc8dfbb8_1
- urllib3=1.25.8=py37_0
- wheel=0.34.2=py_1
- wrapt=1.12.1=py37h9bfed18_1
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h1de35cc_1002
- xorg-libice=1.0.10=h01d97ff_0
- xorg-libsm=1.2.3=h01d97ff_1000
- xorg-libx11=1.6.9=h0b31af3_0
- xorg-libxau=1.0.9=h1de35cc_0
- xorg-libxdmcp=1.1.3=h01d97ff_0
- xorg-libxext=1.3.4=h01d97ff_0
- xorg-libxrender=0.9.10=h01d97ff_1002
- xorg-libxt=1.2.0=h01d97ff_0
- xorg-renderproto=0.11.1=h1de35cc_1002
- xorg-xextproto=7.3.0=h1de35cc_1002
- xorg-xproto=7.0.31=h1de35cc_1007
- xz=5.2.4=h0b31af3_1002
- yaml=0.2.2=h0b31af3_1
- yarl=1.4.2=py37h1de35cc_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h0b31af3_1006
- zstd=1.4.4=hed8d7c8_2
prefix: /Users/satwantkaur/Desktop/Environment/miniconda3/envs/environment