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metadata.yaml
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metadata.yaml
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# To be filled by the author(s) at the time of submission
# -------------------------------------------------------
# Title of the article:
# - For a successful replication, it shoudl be prefixed with "[Re]"
# - For a failed replication, it should be prefixed with "[¬Re]"
# - For other article types, no instruction (but please, not too long)
title: "[Re] Fluctation Domains"
# List of authors with name, orcid number, email and affiliation
# Affiliation "*" means contact author
authors:
- name: "Carl Boettiger"
orcid: "https://orcid.org/0000-0002-1642-628X"
email: "cboettig@berkeley.edu"
affiliations: 1,* # * is for contact author
# List of affiliations with code (corresponding to author affiliations), name
# and address. You can also use these affiliations to add text such as "Equal
# contributions" as name (with no address).
affiliations:
- code: 1
name: University of California, Berkeley
address: 130 Mulford Hall, Berkeley, CA 94720-3114 USA
# List of keywords (adding the programming language might be a good idea)
keywords: ten years reproducibility challenge, R, C
# Code URL and DOI (url is mandatory for replication, doi after acceptance)
# You can get a DOI for your code from Zenodo,
# see https://guides.github.com/activities/citable-code/
code:
- url: https://github.com/cboettig/fluctationDomains
- doi:
# Date URL and DOI (optional if no data)
data:
- url:
- doi:
# Information about the original article that has been replicated
replication:
- cite: Carl Boettiger, Jonathan Dushoff, Joshua S Weitz (2010). Fluctuation domains in adaptive evolution, Theoretical Population Biology 77 (1) 6-13. doi:10.1016/j.tpb.2009.10.003.
- bib: Boettiger2010
- url: https://arxiv.org/abs/1004.4233
- doi: https://doi.org/10.1016/j.tpb.2009.10.003
# Don't forget to surround abstract with double quotes
abstract: "A stochastic ensemble simulation of evolutionary dynamics has been successfully reproduced. Simulation code was in C and could be called from wrappers implemented as an R package. Reproduction required minor modification to the configuration files for compatibility with newer versions of the GNU Scientific Library."
# Bibliography file (yours)
bibliography: bibliography.bib
# Type of the article
# Type can be:
# * Editorial
# * Letter
# * Replication
type: Reproduction
# Scientific domain of the article (e.g. Computational Neuroscience)
# (one domain only & try to be not overly specific)
domain: Ten Years Reproducibility Challenge
# Coding language (main one only if several)
language: C, R
# To be filled by the author(s) after acceptance
# -----------------------------------------------------------------------------
# For example, the URL of the GitHub issue where review actually occured
review:
- url:
contributors:
- name:
orcid:
role: editor
- name:
orcid:
role: reviewer
- name:
orcid:
role: reviewer
# This information will be provided by the editor
dates:
- received: January 1, 2020
- accepted:
- published:
# This information will be provided by the editor
article:
- number: # Article number will be automatically assigned during publication
- doi: # DOI from Zenodo
- url: # Final PDF URL (Zenodo or rescience website?)
# This information will be provided by the editor
journal:
- name: "ReScience C"
- issn: 2430-3658
- volume: 5
- issue: 2