models.rst

Data Models

PyUniProt uses SQLAlchemy to store the data in the database. Use instance of pyuniprot.manager.query.QueryManager to query the content of the database.

Entity–relationship model:

Entry

pyuniprot.manager.models.Entry

Accession

pyuniprot.manager.models.Accession

OtherGeneName

pyuniprot.manager.models.OtherGeneName

Sequence

pyuniprot.manager.models.Sequence

Disease

pyuniprot.manager.models.Disease

DiseaseComment

pyuniprot.manager.models.DiseaseComment

AlternativeFullName

pyuniprot.manager.models.AlternativeFullName

AlternativeShortName

pyuniprot.manager.models.AlternativeShortName

Accession

pyuniprot.manager.models.Accession

Pmid

pyuniprot.manager.models.Pmid

OrganismHost

pyuniprot.manager.models.OrganismHost

DbReference

pyuniprot.manager.models.DbReference

Feature

pyuniprot.manager.models.Feature

Function

pyuniprot.manager.models.Function

Keyword

pyuniprot.manager.models.Keyword

ECNumber

pyuniprot.manager.models.ECNumber

SubcellularLocation

pyuniprot.manager.models.SubcellularLocation

TissueSpecificity

pyuniprot.manager.models.TissueSpecificity

TissueInReference

pyuniprot.manager.models.TissueInReference