:mod:`Ruffus` is a lightweight python module for building computational pipelines.
Note
Ruffus requires Python 3.0 or higher, python 2 is no longer supported but older versions will still be python 2 compatible.
The recomended method for installing CGAT-ruffus is to install using conda through the bioconda channel. The reson for conda being the prefferred method is that the dependancied are taken care of.
conda install -c bioconda ruffus
Ruffus is also available on pypi.
pip install ruffus
To obtain the latest code, check it out from github and activate it.
git clone https://github.com/cgat-developers/ruffus.git cd ruffus python setup.py install