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README.txt
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README.txt
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J/maanova is an open sourced desktop application developed by The Churchill
Group at The Jackson Laboratory with the aim of simplifying the analysis of
microarray experiments. J/maanova allows researchers to access a subset of the
functionality available in the R/maanova package through a graphical user
interface. See http://churchill.jax.org/software/jmaanova.shtml for details.
LICENSE
========
Copyright (c) 2010 The Jackson Laboratory
This software was developed by Gary Churchill's Lab at The Jackson
Laboratory (see http://churchill.jax.org).
This is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This software is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this software. If not, see <http://www.gnu.org/licenses/>.
BUILDING
========
In order successfully complete these build instructions you must have:
* git
* ant >= 1.7.1
* java development kit (JDK) >= 1.5
To obtain and build the source code enter the following commands:
git clone git://github.com/keithshep/j-maanova.git
cd j-maanova
git submodule init
git submodule update
ant
After the build completes you will have a full JNLP distribution built under:
./modules/main/web-dist
Assuming you have a bash shell you should also be able to run from the
command-line (without bothering with a JNLP install) by doing:
cd modules/main
./run-jmaanova.bash
CONTRIBUTING
============
J/maanova is open sourced and we welcome contributions. It is probably a good
idea to get in contact with us if you intend to make a contribution so that we
can coordinate and advise you on whether or not we think we will be able to
accept the proposed changes.