settings

# For more information about this file, see: http://panoptes.readthedocs.org/en/latest/importdata/importsettings/refgenome.html


annotation:                                # Directives for parsing the annotation file (annotation.gff)
  format: GFF                              # Format: GFF = Version 3 GFF file ; GTF = Version 2 GTF file
  geneFeature: [gene, pseudogene]          # Feature id(s) used to identify genes
  exonFeature: [CDS, pseudogenic_exon]     # Feature id(s) used to identify exons
  geneNameAttribute: Name                  # Attribute id used to identify gene names
  geneNameSetAttribute: [synonym, previous_systematic_id]      # Attribute id(s) used to identify gene name sets
  geneDescriptionAttribute: [product.term]    # Attribute id(s) used to identify gene descriptions

externalGeneLinks:
-                                              # Links to external web page that will show up for each gene
  url: https://www.google.co.uk/search?q={Id}  # Url. {Id} will expand into the Gene ID as specified in the GFF file
  name: Google search                          # Display name of the link