Selection

allel.stats.selection

Integrated haplotype score (IHS)

allel.ihs

Cross-population extended haplotype homozygosity (XPEHH)

allel.xpehh

Number of segregating sites by length (NSL)

allel.nsl

allel.xpnsl

Haplotype diversity, Garud's H statistics

allel.garud_h

allel.moving_garud_h

allel.haplotype_diversity

allel.moving_haplotype_diversity

Population branching statistic (PBS)

allel.pbs

Delta Tajima's D

allel.moving_delta_tajima_d

Utilities and plotting functions

allel.standardize

allel.standardize_by_allele_count

allel.ehh_decay

allel.voight_painting

allel.plot_voight_painting

allel.fig_voight_painting

allel.plot_haplotype_frequencies

allel.plot_moving_haplotype_frequencies