For duplicating the environment used in this project use the following commands
conda create -n needle python=3.10 -y
conda activate needle
pip install -r requirements.txt
The datasets used for this study can be downloaded from the following link: https://doi.org/10.17605/OSF.IO/7DMQ4. Unzip osfstorage-archive.zip, and move the contents to data/ folder.
For training the model use the python script
python Train_UIUNet.py
For testing the model use the python script
python Test_UIUNet.py