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Splits for benchmark #9

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ParthBibekar opened this issue Mar 8, 2024 · 3 comments
Closed

Splits for benchmark #9

ParthBibekar opened this issue Mar 8, 2024 · 3 comments

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@ParthBibekar
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Hi,

Congrats on the great work. As I understand data/seqid_split.pt data/das_split.pt and data/structsim_split.pt contains the train, test, validation idx for different splits. And the corresponding pdbid_<chain> for those can be extracted from processed_df.csv. Can you provide this preprocessed processed_df.csv file or directly the PDB ids for easier access?

Thanks!

@chaitjo
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chaitjo commented Mar 8, 2024

Hi @ParthBibekar, thanks for your interest! You can download exactly that via the links in the README: https://github.com/chaitjo/geometric-rna-design?tab=readme-ov-file#downloading-data

@ParthBibekar
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Thanks @chaitjo exactly what I needed!

@chaitjo
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chaitjo commented Mar 11, 2024

Let me know if you need any other help setting this up :)

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