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That is a check in our curation qa process, and it is possible to automate so certainly something to look into implementing
But I would push it off of 5.1.0 simply because we would first want to audit the corpus to ensure we capture any edge cases
The text was updated successfully, but these errors were encountered:
There's no reason this logic is restricted to only Datasets w/ 1 donor_id value. So...
Improve validation for cases where there is only one donor_id value in obs donor metadata
Check that each donor_id only has 1 value for organism_ontology_term_id, sex_ontology_term_id, self_reported_ethnicity_ontology_term_id
Can't include disease (common to have healthy vs disease samples from the same individual) or development_stage (longitudinal studies may have samples from the same individual at different ages)
*Ideally this check occurs within a Collection
brianraymor
added
N.N.N
Placeholder for 2024 issues - will reassign to minor release
and removed
5.2
Next minor CELLxGENE schema version after 5.1
labels
Mar 27, 2024
must include the following requirement:
If there is one
obs['donor_id]
, all observations MUST be the same value.Guidance from @jahilton:
The text was updated successfully, but these errors were encountered: