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wormbase_gff2.txt
63 lines (63 loc) · 6.41 KB
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wormbase_gff2.txt
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I Genomic_canonical region 1 2679 . + . Sequence "cTel33B" ; Note "Clone cTel33B; Genbank AC199162" ; Note "Clone cTel33B; Genbank AC199162"
I Coding_transcript Transcript 12759582 12764949 . - . Transcript "B0019.1" ; WormPep "WP:CE40797" ; Note "amx-2" ; Prediction_status "Partially_confirmed" ; Gene "WBGene00000138" ; CDS "B0019.1" ; WormPep "WP:CE40797" ; Note "amx-2" ; Prediction_status "Partially_confirmed" ; Gene "WBGene00000138"
I Coding_transcript intron 12759829 12759948 . - . Transcript "B0019.1" ; Confirmed_EST EC034652
I Coding_transcript intron 12760014 12760226 . - . Transcript "B0019.1" ; Confirmed_EST EC034652
I Coding_transcript intron 12760320 12760364 . - . Transcript "B0019.1" ; Confirmed_EST yk1054h04.3
I Coding_transcript intron 12760495 12760833 . - . Transcript "B0019.1" ; Confirmed_EST EC027594
I Coding_transcript intron 12760905 12761171 . - . Transcript "B0019.1" ; Confirmed_EST EC027594
I Coding_transcript intron 12761517 12761798 . - . Transcript "B0019.1" ; Confirmed_EST EC027594
I Coding_transcript intron 12761954 12762126 . - . Transcript "B0019.1" ; Confirmed_EST yk262g9.5
I Coding_transcript intron 12762269 12762647 . - . Transcript "B0019.1" ; Confirmed_EST yk262g9.5
I Coding_transcript intron 12762807 12763111 . - . Transcript "B0019.1" ; Confirmed_EST yk1056c07.5
I Coding_transcript intron 12763250 12763447 . - . Transcript "B0019.1" ; Confirmed_EST yk1056c07.5
I Coding_transcript intron 12763656 12763728 . - . Transcript "B0019.1" ; Confirmed_EST yk1056c07.5
I Coding_transcript intron 12763883 12763978 . - . Transcript "B0019.1" ; Confirmed_EST yk1054h04.5 ; Confirmed_EST OSTF088D9_1
I Coding_transcript intron 12764103 12764290 . - . Transcript "B0019.1" ; Confirmed_EST yk1054h04.5 ; Confirmed_EST OSTF088D9_1
I Coding_transcript intron 12764472 12764811 . - . Transcript "B0019.1" ; Confirmed_EST yk1054h04.5 ; Confirmed_EST OSTF088D9_1
I Coding_transcript exon 12759582 12759828 . - . Transcript "B0019.1"
I Coding_transcript exon 12759949 12760013 . - . Transcript "B0019.1"
I Coding_transcript exon 12760227 12760319 . - . Transcript "B0019.1"
I Coding_transcript exon 12760365 12760494 . - . Transcript "B0019.1"
I Coding_transcript exon 12760834 12760904 . - . Transcript "B0019.1"
I Coding_transcript exon 12761172 12761516 . - . Transcript "B0019.1"
I Coding_transcript exon 12761799 12761953 . - . Transcript "B0019.1"
I Coding_transcript exon 12762127 12762268 . - . Transcript "B0019.1"
I Coding_transcript exon 12762648 12762806 . - . Transcript "B0019.1"
I Coding_transcript exon 12763112 12763249 . - . Transcript "B0019.1"
I Coding_transcript exon 12763448 12763655 . - . Transcript "B0019.1"
I Coding_transcript exon 12763729 12763882 . - . Transcript "B0019.1"
I Coding_transcript exon 12763979 12764102 . - . Transcript "B0019.1"
I Coding_transcript exon 12764291 12764471 . - . Transcript "B0019.1"
I Coding_transcript exon 12764812 12764949 . - . Transcript "B0019.1"
I SAGE_tag_unambiguously_mapped SAGE_tag 12761492 12761512 . - . Sequence SAGE:aacggagccgtacacgc;count 5;Gene amx-2;Transcript B0019.1
I SAGE_tag_most_three_prime SAGE_tag 12761499 12761512 . - . Sequence SAGE:aacggagccg;count 9;Gene amx-2;Transcript B0019.1
I mass_spec_genome translated_nucleotide_match 12761920 12761953 . - . Target "Mass_spec_peptide:MSP:FADFSPLDVSDVNFATDDLAK" 10 21 ; Note "MSP:FADFSPLDVSDVNFATDDLAK" ; Protein_matches "WP:CE40797" ; CDS_matches "B0019.1" ; Times_observed "3"
I mass_spec_genome translated_nucleotide_match 12762127 12762155 . - . Target "Mass_spec_peptide:MSP:FADFSPLDVSDVNFATDDLAK" 1 10 ; Note "MSP:FADFSPLDVSDVNFATDDLAK" ; Protein_matches "WP:CE40797" ; CDS_matches "B0019.1" ; Times_observed "3"
I mass_spec_genome translated_nucleotide_match 12763506 12763559 . - . Target "Mass_spec_peptide:MSP:FGHGQSLLAQGGMNEVVR" 1 18 ; Note "MSP:FGHGQSLLAQGGMNEVVR" ; Protein_matches "WP:CE40797" ; CDS_matches "B0019.1" ; Times_observed "1"
I SAGE_tag_unambiguously_mapped SAGE_tag 12763533 12763553 . - . Sequence SAGE:ggcagagtcttttggca;count 1;Gene amx-2;Transcript B0019.1
I mass_spec_genome translated_nucleotide_match 12764361 12764411 . - . Target "Mass_spec_peptide:MSP:NIQQNRPGLSVLVLEAR" 1 17 ; Note "MSP:NIQQNRPGLSVLVLEAR" ; Protein_matches "WP:CE40797" ; CDS_matches "B0019.1" ; Times_observed "2"
I GenePair_STS PCR_product 12762449 12764118 . + . PCR_product "sjj_B0019.1"
I Expr_profile experimental_result_region 12762449 12764118 . + . Expr_profile "B0019.1"
I Allele SNP 12764272 12764272 . + . Variation "snp_B0019[1]" ; Interpolated_map_position "14.003" ; ; RFLP "No"
I Promoterome PCR_product 12764938 12766937 . + . PCR_product "p_B0019.1_93"
I Oligo_set reagent 12759745 12761589 . - . Oligo_set "Aff_B0019.1"
I Orfeome PCR_product 12759747 12764936 . - . PCR_product "mv_B0019.1" ; Amplified 1 ; Amplified 1
I Coding_transcript three_prime_UTR 12759582 12759744 . - . Transcript "B0019.1"
I Coding_transcript coding_exon 12759745 12759828 . - 0 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12759949 12760013 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12760227 12760319 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12760365 12760494 . - 0 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12760834 12760904 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12761172 12761516 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12761799 12761953 . - 1 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12762127 12762268 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12762648 12762806 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12763112 12763249 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12763448 12763655 . - 0 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12763729 12763882 . - 1 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12763979 12764102 . - 2 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript coding_exon 12764291 12764471 . - 0 Transcript "B0019.1" ; CDS "B0019.1"
I Coding_transcript five_prime_UTR 12764938 12764949 . - . Transcript "B0019.1"
I Coding_transcript coding_exon 12764812 12764937 . - 0 Transcript "B0019.1" ; CDS "B0019.1"
X SAGE_tag SAGE_tag 6819353 6819366 . + . Sequence SAGE:aacggagccg;count 9;Gene amx-2;Transcript B0019.1
X gene processed_transcript 944828 948883 . - . Gene "WBGene00004893"