A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis.
This project has finally moved into its own top-level repository:
https://github.com/chapmanb/bcbio-nextgen
Further development and improvements will happen there so please follow that repository for the latest updates. If you have a fork of code you'd like to contribute that is under the old directory structure please let Brad know and we will work to merge it in.