Move cloudbiolinux files to top level

chapmanb · Apr 9, 2011 · 38a6fc9 · 38a6fc9
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diff --git a/ec2/biolinux/README.md → README.md b/ec2/biolinux/README.md → README.md
diff --git a/ec2/biolinux/config/README.md → config/README.md b/ec2/biolinux/config/README.md → config/README.md
diff --git a/ec2/biolinux/config/biodata.yaml → config/biodata.yaml b/ec2/biolinux/config/biodata.yaml → config/biodata.yaml
diff --git a/ec2/biolinux/config/custom.yaml → config/custom.yaml b/ec2/biolinux/config/custom.yaml → config/custom.yaml
diff --git a/ec2/biolinux/config/fabricrc.txt → config/fabricrc.txt b/ec2/biolinux/config/fabricrc.txt → config/fabricrc.txt
diff --git a/ec2/biolinux/config/main.yaml → config/main.yaml b/ec2/biolinux/config/main.yaml → config/main.yaml
diff --git a/ec2/biolinux/config/packages-yum.yaml → config/packages-yum.yaml b/ec2/biolinux/config/packages-yum.yaml → config/packages-yum.yaml
diff --git a/ec2/biolinux/config/packages.yaml → config/packages.yaml b/ec2/biolinux/config/packages.yaml → config/packages.yaml
diff --git a/ec2/biolinux/config/perl-libs.yaml → config/perl-libs.yaml b/ec2/biolinux/config/perl-libs.yaml → config/perl-libs.yaml
diff --git a/ec2/biolinux/config/python-libs.yaml → config/python-libs.yaml b/ec2/biolinux/config/python-libs.yaml → config/python-libs.yaml
diff --git a/ec2/biolinux/config/r-libs.yaml → config/r-libs.yaml b/ec2/biolinux/config/r-libs.yaml → config/r-libs.yaml
diff --git a/ec2/biolinux/config/ruby-libs.yaml → config/ruby-libs.yaml b/ec2/biolinux/config/ruby-libs.yaml → config/ruby-libs.yaml
diff --git a/ec2/biolinux/contributors.mkd → contributors.mkd b/ec2/biolinux/contributors.mkd → contributors.mkd
diff --git a/ec2/biolinux/custom/__init__.py → custom/__init__.py b/ec2/biolinux/custom/__init__.py → custom/__init__.py
diff --git a/ec2/biolinux/custom/bio_nextgen.py → custom/bio_nextgen.py b/ec2/biolinux/custom/bio_nextgen.py → custom/bio_nextgen.py
diff --git a/ec2/biolinux/custom/distributed.py → custom/distributed.py b/ec2/biolinux/custom/distributed.py → custom/distributed.py
diff --git a/ec2/biolinux/custom/java.py → custom/java.py b/ec2/biolinux/custom/java.py → custom/java.py
diff --git a/ec2/biolinux/custom/python.py → custom/python.py b/ec2/biolinux/custom/python.py → custom/python.py
diff --git a/ec2/biolinux/custom/shared.py → custom/shared.py b/ec2/biolinux/custom/shared.py → custom/shared.py
diff --git a/ec2/biolinux/data_fabfile.py → data_fabfile.py b/ec2/biolinux/data_fabfile.py → data_fabfile.py
diff --git a/ec2/biolinux/fabfile.py → fabfile.py b/ec2/biolinux/fabfile.py → fabfile.py
diff --git a/ec2/biolinux/installed_files/bash_login → installed_files/bash_login b/ec2/biolinux/installed_files/bash_login → installed_files/bash_login
diff --git a/ec2/biolinux/installed_files/setupnx.sh → installed_files/setupnx.sh b/ec2/biolinux/installed_files/setupnx.sh → installed_files/setupnx.sh
diff --git a/.../installed_files/tool_data_table_conf.xml → installed_files/tool_data_table_conf.xml b/.../installed_files/tool_data_table_conf.xml → installed_files/tool_data_table_conf.xml
diff --git a/ec2/biolinux/utils/bootstrap.sh → utils/bootstrap.sh b/ec2/biolinux/utils/bootstrap.sh → utils/bootstrap.sh
diff --git a/ec2/biolinux/utils/convert_to_xz.py → utils/convert_to_xz.py b/ec2/biolinux/utils/convert_to_xz.py → utils/convert_to_xz.py
diff --git a/ec2/biolinux/utils/get_biolinux_packages.py → utils/get_biolinux_packages.py b/ec2/biolinux/utils/get_biolinux_packages.py → utils/get_biolinux_packages.py
diff --git a/ec2/biolinux/utils/get_yum_packages.py → utils/get_yum_packages.py b/ec2/biolinux/utils/get_yum_packages.py → utils/get_yum_packages.py
diff --git a/ec2/biolinux/utils/s3_multipart_upload.py → utils/s3_multipart_upload.py b/ec2/biolinux/utils/s3_multipart_upload.py → utils/s3_multipart_upload.py