Run OHDSI Achilles as a container.
docker run \
-e ACHILLES_DB_URI="postgresql://host.docker.internal:5432/postgres" \
-e ACHILLES_DB_USERNAME="postgres_user" \
-e ACHILLES_DB_PASSWORD="postgres_password" \
docker.io/ohdsi/broadsea-achilles:latestYou are encouraged to use the vX.Y.Z image tags corresponding to the releases instead of using latest.
The Broadsea Achilles container can be configured by passing the following environment variables:
| Environment Variable | Description | Default value |
|---|---|---|
| ACHILLES_SOURCE | String name of the data source name. If blank, CDM SOURCE table will be queried to try to obtain this. | "unknown" |
| ACHILLES_DB_URI | The database connection string including DBMS type, host, port, and database name. | "postgresql://localhost:5432/postgres" |
| ACHILLES_DB_USERNAME | The username to connect to the database. If unset, this value is retrieved from the ACHILLES_DB_URI. |
"" |
| ACHILLES_DB_PASSWORD | The password to connect to the the database. If unset, this value is retrieved from the ACHILLES_DB_URI. |
"" |
| ACHILLES_CDM_SCHEMA | Fully qualified name of database schema that contains OMOP CDM schema. On SQL Server, this should specify both the database and the schema, so for example, on SQL Server, cdm instance.dbo. |
"public" |
| ACHILLES_VOCAB_SCHEMA | String name of database schema that contains OMOP Vocabulary. Default is. On SQL Server, this should specify both the database and the schema, so for example results.dbo. |
"public" |
| ACHILLES_RES_SCHEMA | Fully qualified name of database schema that we can write final results to. On SQL Server, this should specify both the database and the schema, so for example, on SQL Server, cdm results.dbo. |
"public" |
| ACHILLES_OUTPUT_BASE | Directory for storing the analysis results in JSON format. | "/opt/achilles/workspace" |
| ACHILLES_CDM_VERSION | Define the OMOP CDM version used: currently supports v5 and above. Use major release number or minor number only (e.g. 5, 5.3) | "5" |
| ACHILLES_NUM_THREADS | The number of threads to use to run Achilles in parallel. | "1" |