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rDNA assembly and max kmer #470

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liushoucheng opened this issue Jun 20, 2023 · 1 comment
Open

rDNA assembly and max kmer #470

liushoucheng opened this issue Jun 20, 2023 · 1 comment

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@liushoucheng
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I have a question, how to set parameters to assemble long fragment repeats like rDNA using hifiasm? Why the max kmer can only go to 63, like verkko high k-mer sizes to construct a multiplex de Bruijn grap is useful to assemble rDNA?

@chhylp123
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We haven't done enough experiments for that. The only option that might be helpful is -D.

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