Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Does it make sense to direct assemble a allopolyploid combined with hic data and with --n-hap=2? #493

Open
Orz-CQ opened this issue Aug 5, 2023 · 1 comment
Open

Does it make sense to direct assemble a allopolyploid combined with hic data and with --n-hap=2? #493

Orz-CQ opened this issue Aug 5, 2023 · 1 comment

Comments

@Orz-CQ
Copy link

Orz-CQ commented Aug 5, 2023 •
edited
Loading

Hi Prof. Li and Haoyu,

As described in the tile, I am curious about what's your opinion about this process of assembling an allopolyploid genome, such as strawberry.

I think maybe we should use the contig from p_utg as the haplotype-aware/haplotype-solved assembly results.
Or maybe we could change the plan while we assemble an allopolyploid genome?

Lan
@Orz-CQ
Copy link
Author

Orz-CQ commented Aug 5, 2023

Well there is already example results generated by this process,
image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Orz-CQ