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Uniprot has changed search syntax #92

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steven-albanese opened this issue May 2, 2017 · 1 comment
Open

Uniprot has changed search syntax #92

steven-albanese opened this issue May 2, 2017 · 1 comment

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@steven-albanese
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Uniprot has changed their query syntax and removed the ability to search using the domain field.
Here is the current documentation

It looks like this is the best way to search for all reviewed human kinases:

annotation:(type:"positional domain" "protein kinase") AND taxonomy:"Homo sapiens (Human) [9606]" AND reviewed:yes

This shouldn't be a big deal for ensembler, but we will need to change the documentation, as some of the examples contain the outdated search terms

@ABChh26
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ABChh26 commented Mar 24, 2021

Hi,I want to query from PDB.Could please teach me how to edit the climmand with a example?Thank you very much!

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