CRAN submit errors

[choonghyunryu]

Thanks, we see without installed suggested packages and the --run-donttest flag:




* checking examples ... [58s] ERROR
Running examples in 'dlookr-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.bins
> ### Title: Visualize Distribution for a "bins" object
> ### Aliases: plot.bins
>
> ### ** Examples
>
> # Generate data for the example
> ## No test:
> heartfailure2 <- heartfailure
> heartfailure2[sample(seq(NROW(heartfailure2)), 20), "platelets"] <- NA
>
> # Binning the platelets variable. default type argument is "quantile"
> bin <- binning(heartfailure2$platelets, nbins = 5)
> plot(bin)
>
> # Using another type arguments
> bin <- binning(heartfailure2$platelets, nbins = 5, type = "equal")
> plot(bin)
>
> bin <- binning(heartfailure2$platelets, nbins = 5, type = "pretty")
> plot(bin)
>
> bin <- binning(heartfailure2$platelets, nbins = 5, type = "kmeans")
Warning: Package "classInt" needed for this function to work. Please install it.
> plot(bin)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(...) : need finite 'xlim' values
Calls: plot -> plot.default -> localWindow -> plot.window
Execution halted



* checking re-building of vignette outputs ... [28s] ERROR
Error(s) in re-building vignettes:
--- re-building 'EDA.Rmd' using rmarkdown

Quitting from lines 625-641 [dbi_table] (EDA.Rmd)
Error: processing vignette 'EDA.Rmd' failed with diagnostics:
trying to use CRAN without setting a mirror
--- failed re-building 'EDA.Rmd'

--- re-building 'diagonosis.Rmd' using rmarkdown

Quitting from lines 534-550 [dbi_table] (diagonosis.Rmd)
Error: processing vignette 'diagonosis.Rmd' failed with diagnostics:
trying to use CRAN without setting a mirror
--- failed re-building 'diagonosis.Rmd'

--- re-building 'introduce.Rmd' using rmarkdown
--- finished re-building 'introduce.Rmd'

--- re-building 'transformation.Rmd' using rmarkdown

Quitting from lines 150-162 [imputate_na2] (transformation.Rmd)
Error: processing vignette 'transformation.Rmd' failed with diagnostics:
there is no package called 'ranger'
--- failed re-building 'transformation.Rmd'

SUMMARY: processing the following files failed:
 'EDA.Rmd' 'diagonosis.Rmd' 'transformation.Rmd'

Error: Vignette re-building failed.
Execution halted

Please fix and resubmit.

Best,
Uwe Ligges

[choonghyunryu]

The problem stems from the "Suggests" package. As CRAN's policies have gotten stricter, dlookr has become a bit more difficult to manage, because it uses a lot of 3rd-party packages.

I fixed the problematic chunk of code in the vignettes with eval=FALSE.