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project.clj
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project.clj
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(defproject cljam "0.6.1-SNAPSHOT"
:description "A DNA Sequence Alignment/Map (SAM) library for Clojure"
:url "https://github.com/chrovis/cljam"
:license {:name "Apache License, Version 2.0"
:url "https://www.apache.org/licenses/LICENSE-2.0"}
:dependencies [[org.clojure/tools.logging "0.4.1"]
[org.clojure/tools.cli "0.3.7"]
[org.apache.commons/commons-compress "1.17"]
[clj-sub-command "0.4.1"]
[digest "1.4.8"]
[bgzf4j "0.1.0"]
[com.climate/claypoole "1.1.4"]
[camel-snake-kebab "0.4.0"]
[proton "0.1.6"]]
:profiles {:dev {:dependencies [[org.clojure/clojure "1.9.0"]
[cavia "0.5.1"]
[criterium "0.4.4"]
[net.totakke/libra "0.1.1"]
[org.tcrawley/dynapath "1.0.0"]
[se.haleby/stub-http "0.2.5"]]
:plugins [[lein-binplus "0.6.4" :exclusions [org.clojure/clojure]]
[lein-codox "0.10.4"]
[lein-marginalia "0.9.1" :exclusions [org.clojure/clojure]]
[lein-cloverage "1.0.11" :exclusions [org.clojure/clojure org.tcrawley/dynapath]]
[net.totakke/lein-libra "0.1.2"]]
:test-selectors {:default #(not-any? % [:slow :remote])
:slow :slow ; Slow tests with local resources
:remote :remote ; Tests with remote resources
:all (constantly true)}
:main ^:skip-aot cljam.tools.main
:global-vars {*warn-on-reflection* true}}
:1.7 {:dependencies [[org.clojure/clojure "1.7.0"]]}
:1.8 {:dependencies [[org.clojure/clojure "1.8.0"]]}
:1.9 {:dependencies [[org.clojure/clojure "1.9.0"]]}
:1.10 {:dependencies [[org.clojure/clojure "1.10.0-alpha6"]]}
:uberjar {:dependencies [[org.clojure/clojure "1.9.0"]
[org.apache.logging.log4j/log4j-api "2.11.1"]
[org.apache.logging.log4j/log4j-core "2.11.1"]]
:resource-paths ["bin-resources"]
:main cljam.tools.main
:jvm-opts ["-Dclojure.compiler.direct-linking=true"]
:aot :all}}
:deploy-repositories [["snapshots" {:url "https://clojars.org/repo/"
:username [:env/clojars_username :gpg]
:password [:env/clojars_password :gpg]}]]
:aliases {"docs" ["do" "codox" ["marg" "-d" "target/literate" "-m"]]}
:bin {:name "cljam"
:bootclasspath true}
:codox {:namespaces [#"^cljam\.(?!tools)[\w\-]+(\.[\w\-]+)?$"]
:output-path "target/docs"
:source-uri "https://github.com/chrovis/cljam/blob/{version}/{filepath}#L{line}"}
:repl-options {:init-ns user}
:signing {:gpg-key "developer@xcoo.jp"})