10.0.0 - release note tracking

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Template Fixes:

Specification Changes:

Field	Change
sequencing_assay_type	New field
host (common name)	New picklist IDs
host (scientific name)	New picklist IDs
organism	New picklist IDs
sequenced by	New picklist IDs
collection method	New picklist IDs
animal_source_of_food	New picklist IDs
food_product	New picklist IDs
environmental_site	New picklist IDs
environmental_material	New picklist IDs

Version Tracking:

Excel Template, Reference Guides, Curation SOP

x = 10 = New sequencing_assay_type field
y = 0 = New picklist IDs and labels
z = 0 = Edit to excel template to fix format issue

New Term SOP N/A unless indicated.

Template To-Dos

• Update picklist value labels/IDs/descriptions
  • Excel Template
  • DataHarmonizer Template (GRDI-enums)
• Update field labels/IDs/descriptions
  • Excel Template
  • DataHarmonizer Template (GRDI-slots)

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Format issue for food_packaging showing incorrect icklist in excel template #73

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NTR shrimp #74

Field	Change
animal_source_of_food	Shrimp [FOODON:03411237]

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NTR scallop #75

Field	Change
animal_source_of_food	Scallop (Pectinidae) [NCBITaxon:6566]
food_product	Scallop [FOODON:03411489]

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NTR Weep fluid collection (pouring) #77

Field	Change
collection method	Weep fluid collection (pouring) [GENEPIO:0101003]

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Christine Liu NTR #76

Field	Change
host (common name)	Sablefish [NCBITaxon:229290], Coho Salmon [NCBITaxon:8019]
host (scientific name)	Anoplopoma fimbria [NCBITaxon:229290], Oncorhynchus kisutch [NCBITaxon:8019]
organism	Shewanella oncorhynchi [NCBITaxon:2726434], Psychrobacter nivimaris [NCBITaxon:281738], Photobacterium indicum[NCBITaxon:81447]
sequenced_by	McGill University [GENEPIO:0101083]

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Field	Change
environmental_site	Barn [ENVO:03501257]

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Field	Change
environmental_material	Broom [ENVO:03501431]
environmental_material	Cleaning equipment [ENVO:03501430] - ID update
environmental_material	Barley straw [FOODON:00004559] - ID update

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Field	Change
anatomical_part	Foot [UBERON:0002387]

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Field	Change
food_product	Chicken thigh [FOODON:02020219], Chicken thigh (skinless, with bone) [FOODON:02020227], Barley seed [FOODON:00003394], Canola seed [FOODON:00004560]

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Field	Change
sequencing_assay_type	amplicon sequencing assay [OBI:0002767], 16S ribosomal gene sequencing assay [OBI:0002763], whole genome sequencing assay [OBI:0002117], whole metagenome sequencing assay [OBI:0002623], whole virome sequencing assay [OBI:0002768]