fetch-protein2ipr.sh

#!/bin/sh
wget "http://beta.sparql.uniprot.org/sparql?query=PREFIX+up%3a%3chttp%3a%2f%2fpurl.uniprot.org%2fcore%2f%3e+%0d%0aPREFIX+taxon%3a%3chttp%3a%2f%2fpurl.uniprot.org%2ftaxonomy%2f%3e+%0d%0aPREFIX+rdf%3a%3chttp%3a%2f%2fwww.w3.org%2f1999%2f02%2f22-rdf-syntax-ns%23%3e+%0d%0aPREFIX+rdfs%3a%3chttp%3a%2f%2fwww.w3.org%2f2000%2f01%2frdf-schema%23%3e+%0d%0aSELECT+%3fprotein+%3fx+%0d%0aWHERE%0d%0a%7b%0d%0a%09%3fprotein+a+up%3aProtein+.%0d%0a%09%3fprotein+up%3aorganism+%3forganism+.+%0d%0a++++++++%3fprotein+up%3aorganism+taxon%3a$1+.%0d%0a++++++++%3fprotein+rdfs%3aseeAlso+%3fx+.%0d%0a%09%3fx+up%3adatabase+%3chttp%3a%2f%2fpurl.uniprot.org%2fdatabase%2fInterPro%3e%0d%0a%7d&format=csv" -O $2