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Use hra-3d-cell-generation API to build cell type visualization for one organ initially #446

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andreasbueckle opened this issue Apr 16, 2024 · 1 comment
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cfde Relevant for CFDE Fall Meeting 2024 good first issue Good for newcomers high priority sennet Relevant for 7/31 SenNet talk

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@andreasbueckle
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andreasbueckle commented Apr 16, 2024

Make a 3D visualization of cells inside an anatomical structure

Needs to use: https://github.com/cns-iu/hra-3d-cell-generation-api

Use SPARQL query at https://grlc.io/api-git/hubmapconsortium/ccf-grlc/subdir/hra-pop/#/default/get_cell_types_in_anatomical_structurescts_per_as

⚠️ Update 5/8/24 ⚠️

  • Place in separate scene?

  • Darken background/skybox color -> dark mode for viewing cells, e.g. colors in
    image

  • Focus on heart M and F:
    image

image

@andreasbueckle andreasbueckle self-assigned this Apr 16, 2024
@andreasbueckle andreasbueckle added the good first issue Good for newcomers label Jun 10, 2024
@andreasbueckle andreasbueckle added cfde Relevant for CFDE Fall Meeting 2024 sennet Relevant for 7/31 SenNet talk labels Jul 3, 2024
@andreasbueckle
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Form @u-p-design
Allow user to turn HRApop on and off via keyboard. Keep an element of the keyboards across all scales. Need a common task keyboard.

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Labels
cfde Relevant for CFDE Fall Meeting 2024 good first issue Good for newcomers high priority sennet Relevant for 7/31 SenNet talk
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