Use hra-3d-cell-generation API to build cell type visualization for one organ initially #446
Labels
cfde
Relevant for CFDE Fall Meeting 2024
good first issue
Good for newcomers
high priority
sennet
Relevant for 7/31 SenNet talk
Milestone
Make a 3D visualization of cells inside an anatomical structure
Needs to use: https://github.com/cns-iu/hra-3d-cell-generation-api
Use SPARQL query at https://grlc.io/api-git/hubmapconsortium/ccf-grlc/subdir/hra-pop/#/default/get_cell_types_in_anatomical_structurescts_per_as
Place in separate scene?
Darken background/skybox color -> dark mode for viewing cells, e.g. colors in
![image](https://private-user-images.githubusercontent.com/22821046/329018174-cd274ab3-85c9-4722-95ce-ea4c72709029.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.xxGiD04S37O7U5YjL789q-qRGArUcwGbWW6eDI56ov8)
Focus on heart M and F:
![image](https://private-user-images.githubusercontent.com/22821046/329010110-842d8fae-5099-4fdc-a0d2-ffeeb9dda5f1.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.nNH297gHDYnMu5muvDbMrHZzOQp_4WYEMVrDW4ct53s)
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