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Fix Postgres CPU burn #573
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According to Heroku, we have a query that accounts for 80% of all time spent in postgres ``` $ heroku pg:outliers total_exec_time | prop_exec_time | ncalls | sync_io_time | query ------------------+----------------+-------------+------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 3790:50:52.62102 | 80.2% | 100,727,265 | 727:08:40.969477 | SELECT ? AS one FROM "repos" WHERE LOWER("repos"."name") = LOWER($1) AND ("repos"."id" != $2) AND "repos"."user_name" = $3 LIMIT $4 ``` Where did it come from? Turns out, it's not in my code. It was added by a rails validation. But, you might be thinking. We only have 2,000 repos in the whole database, why is it updating so much? Well, it turns out this validation is called on EVERY update. For example this sidekiq task: ``` Jun 29 07:00:32 issuetriage app/scheduler.8183: [ActiveJob] Enqueued PopulateIssuesJob (Job ID: 9e04e63f-a515-4dcd-947f-0f777e56dd1b) to Sidekiq(default) with arguments: #<GlobalID:0x00000004f98a68 @uri=#<URI::GID gid://code-triage/Repo/1008>> Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] Performing PopulateIssuesJob (Job ID: 9e04e63f-a515-4dcd-947f-0f777e56dd1b) from Sidekiq(default) with arguments: #<GlobalID:0x007fd098f6bdf8 @uri=#<URI::GID gid://code-triage/Repo/1008>> Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] User Load (10.4ms) SELECT "users".* FROM "users" WHERE ("users"."github_access_token" IS NOT NULL) ORDER BY RANDOM() LIMIT $1 Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] (35.4ms) BEGIN Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] Repo Exists (352.9ms) SELECT 1 AS one FROM "repos" WHERE LOWER("repos"."name") = LOWER($1) AND ("repos"."id" != $2) AND "repos"."user_name" = $3 LIMIT $4 Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] SQL (3.7ms) UPDATE "repos" SET "github_error_msg" = $1, "updated_at" = $2 WHERE "repos"."id" = $3 Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] (4.5ms) COMMIT Jun 29 07:11:05 issuetriage app/worker.1: [ActiveJob] [PopulateIssuesJob] [9e04e63f-a515-4dcd-947f-0f777e56dd1b] Performed PopulateIssuesJob (Job ID: 9e04e63f-a515-4dcd-947f-0f777e56dd1b) from Sidekiq(default) in 629.22ms ``` Going to remove the validation and do it in the DB instead, which is better anyway. However it doesn't give us the nice errors of a rails validation (I don't think). Would be nice to integrate this in the future. Ideally `validates` would see if there is a unique index and use that instead, give us a warning if no unique index existed, because race conditions.
@@ -0,0 +1,5 @@ | |||
class AddUniqueIndexToRepos < ActiveRecord::Migration[5.1] | |||
def change | |||
add_index :repos, [:name, :user_name], :unique => true |
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this needs to use LOWER
, right?
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I'm already lowercasing name and user_name in a pre-commit hook in Ruby. That part of the validation was redundant.
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ah, cool
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You should add a separate uniqueness constraint. The fact that indices happen to constrain is an impl detail.
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Great idea, honestly didn't know you could have a constraint without an index.
Looks like you can alter and add
A possible solution is to simply use DROP IF EXISTS before creating the new constraint.
ALTER TABLE foo ADD CONSTRAINT bar ...;
Can use a unique constraint https://www.postgresql.org/docs/9.4/static/ddl-constraints.html
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note that a CONSTRAINT
implies an index, and the other way around, as far as I know
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We use an active record patch that adds errors on save, and raises on save!
It matches a MySQL exception but can easily be adapted for PG
# Adapted from
# https://gist.github.com/bf4/5594532#file-validations-rb-L5
# https://speakerdeck.com/erniemiller/an-intervention-for-activerecord?slide=117
# Per https://github.com/rails/rails/blob/5-1-stable/activerecord/lib/active_record/validations/uniqueness.rb#L140-L147
# Using this validation method in conjunction with
# {ActiveRecord::Base#save}[rdoc-ref:Persistence#save]
# does not guarantee the absence of duplicate record insertions,
module ActiveRecordUniquenessExceptions
# @example $!.message
# Mysql2::Error: Duplicate entry '1-1-Facility' for key 'idx_user_managed_object': INSERT INTO
# @example usage
#
# class User < ActiveRecord::Base
# validates_database_uniqueness
# end
def validates_database_uniqueness
define_method(:save) do |*args|
begin
super(*args)
rescue ActiveRecord::RecordNotUnique
match_data = $!.message.match(/Duplicate entry '(?<value>[^']+)' for key '(?<key>[^']+)'/) # rubocop:disable Style/SpecialGlobalVars
message = "Duplicate entry for #{match_data[:key]} '#{match_data[:value]}'"
errors.add(:uniqueness, message)
false
end
end
end
end
ActiveSupport.on_load(:active_record) do
extend ActiveRecordUniquenessExceptions
end
Having tried this route in the past in my own apps and being surprised by the effects, I'll note that the difference goes beyond the nice errors. Unless something has changed recently in ActiveRecord, the failure behavior on Previously, if you tried to save a non-unique record, ActiveRecord would find the conflicting record, add a validation error, and and With this change, if you try to save a non-unique record, ActiveRecord just knows that it tried to do a DB operation and it blew up, so even the non-bang version of You seem to have accounted for some of this in the changed unit test, but I thought it would be worth noting in case this is something you (or other readers who found this PR) haven't experienced in the past. It can cause unexpected and surprising failures down the line, generally at the whole-request level. It's been bad enough for me that I decided to always match DB constraints with AR validations, but maybe performance effects are more important here. Generally, YMMV. |
@amcaplan that's a great note and a great point. In the controller action which is the only place we allow for Repo creation, i'm was already doing a search in the DB first to make sure the record didn't already exist. In theory there could be a race condition, between that and the time the record uniqueness check actually happens. In practice there's only 2K records here. Here's the query https://github.com/codetriage/codetriage/blob/3f7ce0615d7ce5101f46ccf7d387513cecb9018a/app/controllers/repos_controller.rb#L29. So basically i'm counting on the user never seeing that exception. I actually first wrapped a bunch of It would be cool if we could tell ActiveRecord when we've enabled a uniqueness constraint (or other constraint) and it could coerce that into behavior that is closer to what we come to expect from |
The challenge there is that In the meantime, I'm glad this has a single known use case with an extremely unlikely error. Given what I've seen, the race condition would cause a 500 with (hopefully) not much information sent back to the client, but that's a pretty tight race condition, and actually is the same race condition as ActiveModel validations would have anyway (which is why it's always recommended to pair with a DB constraint)! |
According to Heroku, we have a query that accounts for 80% of all time spent in postgres
Where did it come from? Turns out, it's not in my code. It was added by a rails validation.
But, you might be thinking. We only have 2,000 repos in the whole database, why is it updating so much?
Well, it turns out this validation is called on EVERY update.
For example this sidekiq task:
Going to remove the validation and do it in the DB instead, which is better anyway. However it doesn't give us the nice errors of a rails validation (I don't think). Would be nice to integrate this in the future.
Ideally
validates
would see if there is a unique index and use that instead, give us a warning if no unique index existed, because race conditions.