Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Feature/issue 1739 #1761

Closed
wants to merge 2 commits into from
Closed

Conversation

YouzhiHuang
Copy link

@YouzhiHuang YouzhiHuang commented Mar 13, 2024

DEP: discontinued cogent3.maths.distribution.tprob(), fixes #1739
Mark tprob() function for removal and delete test for tprob() Not used in cogent3, available in scipy.stats

YouzhiHuang and others added 2 commits March 13, 2024 18:44
Mark tprob() function for removal and delete test for tprob()
Not used in cogent3, available in scipy.stats
Copy link
Collaborator

@GavinHuttley GavinHuttley left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Unfortunately, test_compare_by_tip_distances() fails. This test fails because ultimately, there's a call to tprob() in cogent3.maths.stats.test. You deleted the import, but did not check that the tests still passed. You would need to replace that call with the scipy.stats.t.sf() so that the tests pass.

But thanks for the effort!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

mark tprob() function for removal
2 participants