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compute_neural_rdms missing #2

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Inf-YifanYang opened this issue May 11, 2022 · 3 comments
Open

compute_neural_rdms missing #2

Inf-YifanYang opened this issue May 11, 2022 · 3 comments

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@Inf-YifanYang
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Hi,

Can you provide the code for "compute_neural_rdms"? There is a problem in

from compute_neural_rdms import *

for running get_srp_ridge_scores.py.

Thanks a lot!

@ColinConwell
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This appears to be a legacy import that was never removed. It should be fixed now, but let me know if you have any other trouble.

@Inf-YifanYang
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Thanks for the reply!

How were neural rdms computed? Can you provide the code for the computation of these quantities, for example, cell_response_average.csv.

Thanks!

@ColinConwell
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@Inf-YifanYang The neural rdms were computed from the cell_response_average.csv file. The cell_response_average.csv comes from custom code that parses the data from the AllenBrainObservatory. I can post that code to the repo if it seems useful? But I imagine it will be contingent on how your AllenBrainObservatory data is saved and structured.

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