- Misc typos and minor fixes to vignette.
- Public release. Documentation built with pkgdown at https://colossal-compsci.github.io/tfboot/.
- Preprint on bioRxiv: Turner, S.D., et al. (2023). tfboot: Bootstrapping and statistical analysis for transcription factor binding site-disrupting variants in gene sets. bioRxiv 2023.07.14.549004. DOI: 10.1101/2023.07.14.549004.
- Use simulated chicken in all
@examples
where previously used "Rosie" requiring a nonstandard package to run vignette examples. - Rewrite
read_vcf()
function to no longer usemotifbreakR::snps.from.file()
and useVariantAnnotation::readVcf()
instead, followed by some post-processing. - Move motifbreakR to
Suggests
avoiding the hard dependency, since motifbreakR isn't technically a requirement to install and use tfboot. - Added a changelog / NEWS.md.
Use chicken in vignette.
Initial version.