ak-atomic-primal-sim.ini

train_num_workers = 0
train_batch_sz = 128
train_chunk_sz = 128
resolution = 0.8
side_len = 192
so3_parameterization = gt
shift_input = gt
dynamic_model = nma
experiment_name = ak-sim
experiment_type = exp_simul_atomic
data_loss = CC
encoder = CNN
encoder_conv_layers = [32, 64, 128, 256, 512]
nma_reg_weight = 0.0
proj_scaling_init = 0.0
regressor_conformation_layers = [256, 128]
regressor_shift_layers = [256, 128]
train_learning_rate = 0.001
train_epochs = 1000
train_steps_til_summary = 100
train_epochs_til_checkpoint = 1
val_sz = 1024
val_chunk_sz = 256
val_steps_til_summary = 1000
simul_num_projs = 10000
sim_shift_x_stdev = 0
sim_shift_y_stdev = 0
sim_ctf_defocus_mean = 1.0
sim_ctf_defocus_stdev = 0.3
sim_awgn_snr = -20
atomic_nma_gauss_means = [0]
atomic_nma_gauss_stdevs = [2]
atomic_pdb = data/open.pdb
atomic_nma_number_modes = 1
atomic_cg_selection = all
log_dir = logs/