You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am trying to install sonLib for CAT and having an issue with make test.
Following are the error messages:
`There were 7 failures:
testStPhylogeny_getLinkedSpeciesTree: tests/stPhylogenyTest.c:1368: expected <((a,b)e,(c,d)f)g;> but was <((a:inf,b:inf)e:inf,(c:inf,d:inf)f:inf)g:inf;>
testStPhylogeny_greedySplitDecomposition: tests/stPhylogenyTest.c:1348: expected <(10:0,((1:1,11:1):1,(2:1,4:1,7:1):1,(8:1,(6:1,(0:1,5:1):1):1,(3:1,9:1):1):1):1);> but was <(10:0,((1:1,11:1):1,(2:1,4:1,7:1):1,(8:1,(6:1,(0:1,5:1):1):1,(3:1,9:1):1):1):1):inf;>
testStPhylogeny_rootByReconciliationAtMostBinary_simpleTests: tests/stPhylogenyTest.c:996: expected <((0:1,1:1):0.5,(2:1,3:2):0.5);> but was <((0:1,1:1):0.5,(2:1,3:2):0.5):inf;>
testStPhylogeny_reconcileNonBinary: tests/stPhylogenyTest.c:1163: expected <((((opossum-gene1,tasmanian_devil-gene1)Metatheria,kangaroo-gene1)Metatheria,((mouse-gene,human-gene)Euarchontoglires,cow-gene)Boreoeutheria)Theria,((opossum-gene2,kangaroo-gene2)Metatheria,(bandicoot-gene3,kangaroo-gene3)Metatheria)Metatheria)Theria;> but was <((((opossum-gene1:inf,tasmanian_devil-gene1:inf)Metatheria:inf,kangaroo-gene1:inf)Metatheria:inf,((mouse-gene:inf,human-gene:inf)Euarchontoglires:inf,cow-gene:inf)Boreoeutheria:inf)Theria:inf,((opossum-gene2:inf,kangaroo-gene2:inf)Metatheria:inf,(bandicoot-gene3:inf,kangaroo-gene3:inf)Metatheria:inf)Metatheria:inf)Theria:inf;>
test_stTree_newickTreeParser: tests/sonLibTreeTest.c:133: expected <(((a,b,(c,))d),e)f;> but was <(((a:inf,b:inf,(c:inf,:inf):inf)d:inf):inf,e:inf)f:inf;>
test_stTree_reRoot: tests/sonLibTreeTest.c:210: expected <((((C:1,D:1)B:8,F:3,G:3)E:5,I:3)H:4,(K:4)J:1);> but was <((((C:1,D:1)B:8,F:3,G:3)E:5,I:3)H:4,(K:4)J:1):inf;>
!!!FAILURES!!!
Runs: 175 Passes: 168 Fails: 7 seems like it will add aninf` to every branch without branch length.
I'm not sure if I've missed something, but would appreciate any advice on how I might correct this.
Best,
Langqing
The text was updated successfully, but these errors were encountered:
Hi all,
I am trying to install sonLib for CAT and having an issue with
make test
.Following are the error messages:
`There were 7 failures:
!!!FAILURES!!!
Runs: 175 Passes: 168 Fails: 7
seems like it will add an
inf` to every branch without branch length.I'm not sure if I've missed something, but would appreciate any advice on how I might correct this.
Best,
Langqing
The text was updated successfully, but these errors were encountered: