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Improve the starting state for *BEAST analyses with a large number of loci (i.e. >= 8 loci) #18

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tgvaughan opened this issue Jan 19, 2014 · 1 comment
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Improve the starting state for *BEAST analyses with a large number of loci (i.e. >= 8 loci) #18

tgvaughan opened this issue Jan 19, 2014 · 1 comment
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@jheled
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enhancement HIGH priority

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@tgvaughan
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Joseph has devised a new heuristic for creating a starting state for a *BEAST analysis when there are a large numbers of loci. We should incorporate this into the *BEAST state initialisation in BEAST2 to avoid very long burn-in times with large analyses.

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Project Member #1 jheled

Code submitted, tested lightly. Needs more testing, and integration with templates and BEAUTI.
@ghost ghost assigned jheled Jan 19, 2014
@rbouckaert
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Implemented in StarBeastStartState.

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@tgvaughan @jheled @rbouckaert