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Newick tree is wrong #33

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tgvaughan opened this issue Jan 19, 2014 · 1 comment
Closed

Newick tree is wrong #33

tgvaughan opened this issue Jan 19, 2014 · 1 comment
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Could not reproduce defect LOW priority

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@tgvaughan
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input original tree below into newick tree TreeParser, and then BEAST 2 output a different tree as inputted.

BEAST 2 output:
0.036831999999999976,1217:(615:(613:(612:(611:(2:0.0,3:0.006647999999999987):0.09753100000000003

input:
0.036831999999999976,(((('NZAC03011539|Plot_4|Subplot_P|LBIinv0013|G6|MT-CO1':0.0,'NZAC03013498|Plot_5|Subplot_A|LBIinv0012|B2|MT-CO1':0.006647999999999987):0.09753100000000003,

the number of brackets increased from 4 to 5.

original tree is attached.

Comments from GC issue

Project Member #1 alexei.drummond

Not sure this is a bug with TreeParser class. We should focus on issues with BEAST2, rather than code that uses BEAST2 classes.

Status: New
Labels: -Priority-High Priority-Low
@rbouckaert rbouckaert self-assigned this Feb 16, 2014
@rbouckaert
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Could not reproduce.

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@tgvaughan @rbouckaert @walterxie