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rsHRF_tutorials.md

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Data sets and rsHRF tutorials


  1. Simultaneous intrinsic optical signals (IOS) and local field potentials (LFP) recording from a Sprague-Dawley rat.

This data was recorded from a Sprague-Dawley rat(male) under 1.8-2% isoflurane anesthesia, which was detailed described in (Pan, Lee et al. 2018). We thank Wen-Ju Pan and Shella Keilholz for providing us with this data.

rsHRF batch script: rsHRF_demo_LFP_IOS.m (in rsHRF_demo_LFP_IOS.zip )

Pan, W. J., S. Y. Lee, J. Billings, M. Nezafati, W. Majeed, E. Buckley and S. Keilholz (2018). "Detection of neural light-scattering activity in vivo: optical transmittance studies in the rat brain." Neuroimage 179: 207-214.


  1. Resting-state fMRI dataset (UCLA Consortium for Neuropsychiatric Phenomics)

This dataset has been publicly released by the UCLA Consortium for Neuropsychiatric Phenomics (Poldrack, Congdon et al. 2016). It has been pre-processed using the fMRIprep pipeline (Gorgolewski, Durnez et al. 2017), and can be accessed at https://www.openfmri.org/dataset/ds000030/.

rsHRF batch script: rsHRF_demo_UCLA_batch.m (in rsHRF_demo_UCLA.zip).

The analysis results (rsHRF_demo_UCLA_results.zip 150 MB) can be download here.

Poldrack, R. A., E. Congdon, W. Triplett, K. J. Gorgolewski, K. H. Karlsgodt, J. A. Mumford, F. W. Sabb, N. B. Freimer, E. D. London, T. D. Cannon and R. M. Bilder (2016). "A phenome-wide examination of neural and cognitive function." Sci Data 3: 160110.

Gorgolewski, K. J., J. Durnez and R. A. Poldrack (2017). "Preprocessed Consortium for Neuropsychiatric Phenomics dataset." F1000Res 6: 1262.