multi-threading in running model 1

[rezarahman12]

Hi CHEUI team,

I'm running the below cheui script for almost 24 hours with 28 CPU in HPC, however, it seems slow. Is there any way to specify CPU core as we can do in CHEUI preprocessing steps?

python /scratch/qbi/uqmrah19/CHEUI/scripts/CHEUI_predict_model1.py
-i /scratch/qbi/uqmrah19/CHEUI/cheui/ONT_Reza/cheui_analysis/ctrl1/out_A_signals+IDs.p/eventalign_signals+IDS.p
-m /scratch/qbi/uqmrah19/CHEUI/CHEUI_trained_models/CHEUI_m6A_model1.h5
-o ./read_level_m6A_predictions_WT_rep1.txt
-l WT_rep1

I appreciate your time.

Best regards
Reza

[vetmohit89]

Hello, I'm experiencing similar issues. The CHEUI_predict_model1.py script runs painfully slow, possibly due to loading and predicting on every single signal. Is there a way to speed up this process?