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ImportError: libprotobuf.so.21: cannot open shared object file: No such file or directory #52

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Rheza001 opened this issue Feb 4, 2020 · 17 comments
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ImportError: libprotobuf.so.21: cannot open shared object file: No such file or directory #52

Rheza001 opened this issue Feb 4, 2020 · 17 comments

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@Rheza001
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Rheza001 commented Feb 4, 2020

Actual Behavior

So i'm trying this code demo here: https://tolotra.com/2018/09/15/how-to-retrain-ssd-mobilenet-for-real-time-object-detection-using-a-raspberry-pi-and-movidius-neural-compute-stick/#comment-71 and installed the caffe library using conda-forge repo, but when i tried to run a shell program like this:

root_dir=$cur_dir/../..

cd $root_dir

redo=1
dataset_name="bird_dataset" #Edit this to your dataset name. Don't change anything else
data_root_dir="$HOME/python_train/mobilenet-ssd/$dataset_name"
mapfile="$data_root_dir/labelmap.prototxt"
anno_type="detection"
db="lmdb"
min_dim=0
max_dim=0
width=0
height=0

extra_cmd="--encode-type=jpg --encoded"
if [ $redo ]
then
  extra_cmd="$extra_cmd --redo"
fi
for subset in test trainval
do
  python $root_dir/scripts/create_annoset.py --anno-type=$anno_type --label-map-file=$mapfile --min-dim=$min_dim --max-dim=$max_dim --resize-width=$width --resize-height=$height --check-label $extra_cmd $data_root_dir $data_root_dir/Structure/$subset.txt $data_root_dir/$dataset_name/$db/$dataset_name"_"$subset"_"$db examples/$dataset_name
done

that used caffe library, i got this problem:

ImportError: libprotobuf.so.21: cannot open shared object file: No such file or directory

Expected Behavior

Steps to Reproduce

Anaconda or Miniconda version: conda 4.8.1
Operating System: Arch Linux
conda info
active environment : env_dlib
    active env location : /home/rheza/.conda/envs/env_dlib
            shell level : 2
       user config file : /home/rheza/.condarc
 populated config files : /home/rheza/.condarc
          conda version : 4.8.1
    conda-build version : 3.18.9
         python version : 3.7.4.final.0
       virtual packages : __glibc=2.30
       base environment : /opt/anaconda  (read only)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /opt/anaconda/pkgs
                          /home/rheza/.conda/pkgs
       envs directories : /home/rheza/.conda/envs
                          /opt/anaconda/envs
               platform : linux-64
             user-agent : conda/4.8.1 requests/2.22.0 CPython/3.7.4 Linux/4.19.101-1-lts arch/rolling glibc/2.30
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
conda list --show-channel-urls
# packages in environment at /home/rheza/.conda/envs/env_dlib:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main    defaults
absl-py                   0.9.0                    pypi_0    pypi
astor                     0.8.1                    pypi_0    pypi
backcall                  0.1.0                      py_0    conda-forge
boost                     1.70.0           py36h9de70de_1    conda-forge
boost-cpp                 1.70.0               h8e57a91_2    conda-forge
bzip2                     1.0.8                h7b6447c_0    defaults
ca-certificates           2019.11.28           hecc5488_0    conda-forge
cachetools                4.0.0                    pypi_0    pypi
caffe                     1.0             py36hc3c8a5e_203    conda-forge
cairo                     1.16.0            hfb77d84_1002    conda-forge
certifi                   2019.11.28               py36_0    conda-forge
chardet                   3.0.4                    pypi_0    pypi
click                     7.0                      py36_0    defaults
cloudpickle               1.2.2                      py_1    conda-forge
cycler                    0.10.0                   py36_0    defaults
cytoolz                   0.10.1           py36h516909a_0    conda-forge
dask-core                 2.10.1                     py_0    conda-forge
dbus                      1.13.12              h746ee38_0    defaults
decorator                 4.4.1                      py_0    conda-forge
dlib                      19.19            py36h5245418_0    conda-forge
expat                     2.2.6                he6710b0_0    defaults
ffmpeg                    4.1.3                h167e202_0    conda-forge
flask                     1.1.1                      py_0    defaults
fontconfig                2.13.1            h86ecdb6_1001    conda-forge
freetype                  2.9.1                h8a8886c_1    defaults
gast                      0.2.2                    pypi_0    pypi
gflags                    2.2.2             he1b5a44_1002    conda-forge
giflib                    5.1.4                h14c3975_1    defaults
glib                      2.63.1               h5a9c865_0    defaults
glog                      0.4.0                he1b5a44_1    conda-forge
gmp                       6.1.2                h6c8ec71_1    defaults
gnutls                    3.6.5             hd3a4fd2_1002    conda-forge
google-auth               1.11.0                   pypi_0    pypi
google-auth-oauthlib      0.4.1                    pypi_0    pypi
google-pasta              0.1.8                    pypi_0    pypi
graphite2                 1.3.13               h23475e2_0    defaults
grpcio                    1.26.0                   pypi_0    pypi
gst-plugins-base          1.14.5               h0935bb2_0    conda-forge
gstreamer                 1.14.5               h36ae1b5_0    conda-forge
h5py                      2.10.0          nompi_py36h513d04c_101    conda-forge
harfbuzz                  2.4.0                h9f30f68_3    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
idna                      2.8                      pypi_0    pypi
imageio                   2.6.1                    py36_0    conda-forge
imutils                   0.5.3                    py36_0    conda-forge
ipython                   7.12.0           py36h5ca1d4c_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
itsdangerous              1.1.0                    py36_0    defaults
jasper                    1.900.1              hd497a04_4    defaults
jedi                      0.16.0                   py36_0    conda-forge
jinja2                    2.10.3                     py_0    defaults
jpeg                      9c                h14c3975_1001    conda-forge
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.0                    pypi_0    pypi
kiwisolver                1.1.0            py36he6710b0_0    defaults
lame                      3.100                h7b6447c_0    defaults
ld_impl_linux-64          2.33.1               h53a641e_7    defaults
leveldb                   1.18              h6416369_1001    conda-forge
libblas                   3.8.0               14_openblas    conda-forge
libcblas                  3.8.0               14_openblas    conda-forge
libedit                   3.1.20181209         hc058e9b_0    defaults
libffi                    3.2.1                hd88cf55_4    defaults
libgcc-ng                 9.1.0                hdf63c60_0    defaults
libgfortran-ng            7.3.0                hdf63c60_0    defaults
libiconv                  1.15                 h63c8f33_5    defaults
liblapack                 3.8.0               14_openblas    conda-forge
liblapacke                3.8.0               14_openblas    conda-forge
libopenblas               0.3.7                h5ec1e0e_6    conda-forge
libpng                    1.6.37               hbc83047_0    defaults
libprotobuf               3.4.1                h5b8497f_0    defaults
libstdcxx-ng              9.1.0                hdf63c60_0    defaults
libtiff                   4.1.0                h2733197_0    defaults
libuuid                   2.32.1            h14c3975_1000    conda-forge
libwebp                   1.0.1                h8e7db2f_0    defaults
libxcb                    1.13                 h1bed415_1    defaults
libxml2                   2.9.9                hea5a465_1    defaults
lmdb                      0.9.24               h516909a_0    conda-forge
lxml                      4.2.4                    pypi_0    pypi
markdown                  3.1.1                    pypi_0    pypi
markupsafe                1.1.1            py36h7b6447c_0    defaults
matplotlib                3.1.2                    py36_1    conda-forge
matplotlib-base           3.1.2            py36h250f245_1    conda-forge
ncurses                   6.1                  he6710b0_1    defaults
nettle                    3.4.1             h1bed415_1002    conda-forge
networkx                  2.4                        py_0    conda-forge
numpy                     1.17.5           py36h95a1406_0    conda-forge
oauthlib                  3.1.0                    pypi_0    pypi
olefile                   0.46                     py36_0    defaults
opencv                    4.1.0            py36h3aa1047_6    conda-forge
openh264                  1.8.0                hd408876_0    defaults
openssl                   1.1.1d               h516909a_0    conda-forge
opt-einsum                3.1.0                    pypi_0    pypi
pandas                    1.0.0            py36hb3f55d8_0    conda-forge
parso                     0.6.1                      py_0    conda-forge
pcre                      8.43                 he6710b0_0    defaults
pexpect                   4.8.0                    py36_0    conda-forge
pickleshare               0.7.5                 py36_1000    conda-forge
pillow                    7.0.0            py36hb39fc2d_0    defaults
pip                       20.0.2                   py36_1    defaults
pixman                    0.38.0               h7b6447c_0    defaults
prompt_toolkit            3.0.3                      py_0    conda-forge
protobuf                  3.11.2                   pypi_0    pypi
ptyprocess                0.6.0                   py_1001    conda-forge
pyasn1                    0.4.8                    pypi_0    pypi
pyasn1-modules            0.2.8                    pypi_0    pypi
pygments                  2.5.2                      py_0    conda-forge
pyparsing                 2.4.6                      py_0    defaults
pyqt                      5.9.2            py36h05f1152_2    defaults
pyqt5                     5.10.1                   pypi_0    pypi
python                    3.6.10               h0371630_0    defaults
python-dateutil           2.8.1                      py_0    defaults
python-gflags             3.1.2                      py_0    conda-forge
python-leveldb            0.194           py36he1b5a44_1000    conda-forge
pytz                      2019.3                     py_0    conda-forge
pywavelets                1.1.1            py36hc1659b7_0    conda-forge
pyyaml                    5.3              py36h516909a_0    conda-forge
qt                        5.9.7                h0c104cb_3    conda-forge
readline                  7.0                  h7b6447c_5    defaults
requests                  2.22.0                   pypi_0    pypi
requests-oauthlib         1.3.0                    pypi_0    pypi
rsa                       4.0                      pypi_0    pypi
scikit-image              0.16.2           py36hb3f55d8_0    conda-forge
scipy                     1.4.1            py36h921218d_0    conda-forge
setuptools                45.1.0                   py36_0    defaults
sip                       4.19.8                   pypi_0    pypi
six                       1.14.0                   py36_0    defaults
snappy                    1.1.8                he1b5a44_1    conda-forge
sqlite                    3.30.1               h7b6447c_0    defaults
tensorboard               2.1.0                    pypi_0    pypi
tensorflow                2.1.0                    pypi_0    pypi
tensorflow-estimator      2.1.0                    pypi_0    pypi
termcolor                 1.1.0                    pypi_0    pypi
tk                        8.6.10               hed695b0_0    conda-forge
toolz                     0.10.0                     py_0    conda-forge
tornado                   6.0.3            py36h7b6447c_0    defaults
traitlets                 4.3.3                    py36_0    conda-forge
urllib3                   1.25.8                   pypi_0    pypi
wcwidth                   0.1.8                      py_0    conda-forge
werkzeug                  0.16.1                     py_0    defaults
wheel                     0.34.1                   py36_0    defaults
wrapt                     1.11.2                   pypi_0    pypi
x264                      1!152.20180806       h7b6447c_0    defaults
xorg-kbproto              1.0.7             h14c3975_1002    conda-forge
xorg-libice               1.0.10               h516909a_0    conda-forge
xorg-libsm                1.2.3             h84519dc_1000    conda-forge
xorg-libx11               1.6.9                h516909a_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-renderproto          0.11.1            h14c3975_1002    conda-forge
xorg-xextproto            7.3.0             h14c3975_1002    conda-forge
xorg-xproto               7.0.31            h14c3975_1007    conda-forge
xz                        5.2.4                h14c3975_4    defaults
yaml                      0.2.2                h516909a_1    conda-forge
zlib                      1.2.11               h7b6447c_3    defaults
zstd                      1.3.7                h0b5b093_0    defaults

please, help me. i'm stuck at this process. thank you
@marcelotrevisani
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marcelotrevisani commented Feb 4, 2020 •
edited
Loading

Please, try to install libprotobuf
If it solve your problem, please let us know.
We might have to update the recipe
conda install libprotobuf

@Rheza001
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Rheza001 commented Feb 4, 2020 •
edited
Loading

Please, try to install libprotobuf
If it solve your problem, please let us know.
We might have to update the recipe
conda install libprotobuf

(env_dlib) [rheza@rheza001-arch examples]$ conda install libprotobuf
Collecting package metadata (current_repodata.json): done
Solving environment: done

# All requested packages already installed.

I have installed libprotobuf on conda, but still no luck.

@Rheza001
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Rheza001 commented Feb 5, 2020

@marcelotrevisani what should i do?

@marcelotrevisani
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marcelotrevisani commented Feb 5, 2020 •
edited
Loading

@marcelotrevisani what should i do?

I think I fixed it with #53

Could you please try with this new package?
try to update your caffe version please

conda update caffe

it should have the _204 at the end of the build string

for example for python 3.8

caffe                            1.0 py38hff8c9ee_204  conda-forge

conda list

➜ conda list
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       0_gnu    conda-forge
backcall                  0.1.0                      py_0    conda-forge
boost                     1.70.0           py37h9de70de_1    conda-forge
boost-cpp                 1.70.0               h8e57a91_2    conda-forge
bzip2                     1.0.8                h516909a_2    conda-forge
ca-certificates           2019.11.28           hecc5488_0    conda-forge
caffe                     1.0             py37hff8c9ee_204    conda-forge
cairo                     1.16.0            hfb77d84_1002    conda-forge
certifi                   2019.11.28               py37_0    conda-forge
cloudpickle               1.2.2                      py_1    conda-forge
cycler                    0.10.0                     py_2    conda-forge
cytoolz                   0.10.1           py37h516909a_0    conda-forge
dask-core                 2.10.1                     py_0    conda-forge
dbus                      1.13.6               he372182_0    conda-forge
decorator                 4.4.1                      py_0    conda-forge
expat                     2.2.9                he1b5a44_2    conda-forge
ffmpeg                    4.1.3                h167e202_0    conda-forge
fontconfig                2.13.1            h86ecdb6_1001    conda-forge
freetype                  2.10.0               he983fc9_1    conda-forge
gettext                   0.19.8.1          hc5be6a0_1002    conda-forge
gflags                    2.2.2             he1b5a44_1002    conda-forge
giflib                    5.2.1                h516909a_1    conda-forge
glib                      2.58.3          py37h6f030ca_1002    conda-forge
glog                      0.4.0                he1b5a44_1    conda-forge
gmp                       6.2.0                he1b5a44_1    conda-forge
gnutls                    3.6.5             hd3a4fd2_1002    conda-forge
graphite2                 1.3.13            hf484d3e_1000    conda-forge
gst-plugins-base          1.14.5               h0935bb2_1    conda-forge
gstreamer                 1.14.5               h36ae1b5_1    conda-forge
h5py                      2.10.0          nompi_py37h513d04c_101    conda-forge
harfbuzz                  2.4.0                h9f30f68_3    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
imageio                   2.6.1                    py37_0    conda-forge
ipython                   7.12.0           py37h5ca1d4c_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jasper                    1.900.1           h07fcdf6_1006    conda-forge
jedi                      0.16.0                   py37_0    conda-forge
jpeg                      9c                h14c3975_1001    conda-forge
kiwisolver                1.1.0            py37hc9558a2_0    conda-forge
lame                      3.100             h14c3975_1001    conda-forge
ld_impl_linux-64          2.33.1               h53a641e_8    conda-forge
leveldb                   1.18              h6416369_1001    conda-forge
libblas                   3.8.0               14_openblas    conda-forge
libcblas                  3.8.0               14_openblas    conda-forge
libclang                  9.0.1           default_hde54327_0    conda-forge
libffi                    3.2.1             he1b5a44_1006    conda-forge
libgcc-ng                 9.2.0                h24d8f2e_2    conda-forge
libgfortran-ng            7.3.0                hdf63c60_5    conda-forge
libgomp                   9.2.0                h24d8f2e_2    conda-forge
libiconv                  1.15              h516909a_1005    conda-forge
liblapack                 3.8.0               14_openblas    conda-forge
liblapacke                3.8.0               14_openblas    conda-forge
libllvm9                  9.0.1                hc9558a2_0    conda-forge
libopenblas               0.3.7                h5ec1e0e_6    conda-forge
libopencv                 4.2.0                    py37_2    conda-forge
libpng                    1.6.37               hed695b0_0    conda-forge
libprotobuf               3.11.3               h8b12597_0    conda-forge
libstdcxx-ng              9.2.0                hdf63c60_2    conda-forge
libtiff                   4.1.0                hc3755c2_3    conda-forge
libuuid                   2.32.1            h14c3975_1000    conda-forge
libwebp                   1.0.2                h56121f0_5    conda-forge
libxcb                    1.13              h14c3975_1002    conda-forge
libxkbcommon              0.9.1                hebb1f50_0    conda-forge
libxml2                   2.9.10               hee79883_0    conda-forge
lmdb                      0.9.24               h516909a_0    conda-forge
lz4-c                     1.8.3             he1b5a44_1001    conda-forge
matplotlib                3.1.3                    py37_0    conda-forge
matplotlib-base           3.1.3            py37h250f245_0    conda-forge
ncurses                   6.1               hf484d3e_1002    conda-forge
nettle                    3.4.1             h1bed415_1002    conda-forge
networkx                  2.4                        py_0    conda-forge
nspr                      4.24                 he1b5a44_0    conda-forge
nss                       3.47                 he751ad9_0    conda-forge
numpy                     1.18.1           py37h95a1406_0    conda-forge
olefile                   0.46                       py_0    conda-forge
opencv                    4.2.0                    py37_2    conda-forge
openh264                  1.8.0             hdbcaa40_1000    conda-forge
openssl                   1.1.1d               h516909a_0    conda-forge
pandas                    1.0.0            py37hb3f55d8_0    conda-forge
parso                     0.6.1                      py_0    conda-forge
pcre                      8.43                 he1b5a44_0    conda-forge
pexpect                   4.8.0                    py37_0    conda-forge
pickleshare               0.7.5                 py37_1000    conda-forge
pillow                    7.0.0            py37hefe7db6_0    conda-forge
pip                       20.0.2                   py37_1    conda-forge
pixman                    0.38.0            h516909a_1003    conda-forge
prompt_toolkit            3.0.3                      py_0    conda-forge
protobuf                  3.11.3           py37he1b5a44_0    conda-forge
pthread-stubs             0.4               h14c3975_1001    conda-forge
ptyprocess                0.6.0                   py_1001    conda-forge
py-opencv                 4.2.0            py37h5ca1d4c_2    conda-forge
pygments                  2.5.2                      py_0    conda-forge
pyparsing                 2.4.6                      py_0    conda-forge
pyqt                      5.12.3           py37hcca6a23_1    conda-forge
pyqt5-sip                 4.19.18                  pypi_0    pypi
pyqtwebengine             5.12.1                   pypi_0    pypi
python                    3.7.6                h357f687_2    conda-forge
python-dateutil           2.8.1                      py_0    conda-forge
python-gflags             3.1.2                      py_0    conda-forge
python-leveldb            0.194           py37he1b5a44_1000    conda-forge
pytz                      2019.3                     py_0    conda-forge
pywavelets                1.1.1            py37hc1659b7_0    conda-forge
pyyaml                    5.3              py37h516909a_0    conda-forge
qt                        5.12.5               hd8c4c69_1    conda-forge
readline                  8.0                  hf8c457e_0    conda-forge
scikit-image              0.16.2           py37hb3f55d8_0    conda-forge
scipy                     1.4.1            py37h921218d_0    conda-forge
setuptools                45.1.0                   py37_0    conda-forge
six                       1.14.0                   py37_0    conda-forge
snappy                    1.1.7             he1b5a44_1003    conda-forge
sqlite                    3.30.1               hcee41ef_0    conda-forge
tk                        8.6.10               hed695b0_0    conda-forge
toolz                     0.10.0                     py_0    conda-forge
tornado                   6.0.3            py37h516909a_0    conda-forge
traitlets                 4.3.3                    py37_0    conda-forge
wcwidth                   0.1.8                      py_0    conda-forge
wheel                     0.34.2                   py37_0    conda-forge
x264                      1!152.20180806       h14c3975_0    conda-forge
xorg-kbproto              1.0.7             h14c3975_1002    conda-forge
xorg-libice               1.0.10               h516909a_0    conda-forge
xorg-libsm                1.2.3             h84519dc_1000    conda-forge
xorg-libx11               1.6.9                h516909a_0    conda-forge
xorg-libxau               1.0.9                h14c3975_0    conda-forge
xorg-libxdmcp             1.1.3                h516909a_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-renderproto          0.11.1            h14c3975_1002    conda-forge
xorg-xextproto            7.3.0             h14c3975_1002    conda-forge
xorg-xproto               7.0.31            h14c3975_1007    conda-forge
xz                        5.2.4             h14c3975_1001    conda-forge
yaml                      0.2.2                h516909a_1    conda-forge
zlib                      1.2.11            h516909a_1006    conda-forge
zstd                      1.4.4                h3b9ef0a_1    conda-forge

@marcelotrevisani
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if it is fixed with this new package, could you please close this issue?

@Rheza001
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Rheza001 commented Feb 5, 2020

updating...

@Rheza001
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Rheza001 commented Feb 5, 2020

@marcelotrevisani Nope, still saying _203 after updating

(env_dlib) [rheza@rheza001-arch python-train]$ conda update caffe
Collecting package metadata (current_repodata.json): done
Solving environment: done


==> WARNING: A newer version of conda exists. <==
  current version: 4.8.1
  latest version: 4.8.2

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/rheza/.conda/envs/env_dlib

  added / updated specs:
    - caffe


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    backcall-0.1.0             |           py36_0          20 KB
    cytoolz-0.10.1             |   py36h7b6447c_0         377 KB
    dask-core-2.10.1           |             py_0         562 KB
    decorator-4.4.1            |             py_0          13 KB
    gflags-2.2.2               |       he6710b0_0         126 KB
    glog-0.4.0                 |       he6710b0_0         123 KB
    imageio-2.6.1              |           py36_0         3.2 MB
    ipython-7.12.0             |   py36h5ca1d4c_0         990 KB
    ipython_genutils-0.2.0     |           py36_0          39 KB
    jedi-0.16.0                |           py36_0         757 KB
    jinja2-2.11.1              |             py_0         104 KB
    leveldb-1.20               |       hf484d3e_1         253 KB
    lmdb-0.9.23                |       he6710b0_0         418 KB
    networkx-2.4               |             py_0         1.2 MB
    pandas-1.0.0               |   py36h0573a6f_0         8.6 MB
    parso-0.6.0                |             py_0          69 KB
    pexpect-4.8.0              |           py36_0          82 KB
    pickleshare-0.7.5          |           py36_0          13 KB
    prompt_toolkit-3.0.3       |             py_0         242 KB
    ptyprocess-0.6.0           |           py36_0          23 KB
    pygments-2.5.2             |             py_0         672 KB
    python-gflags-3.1.2        |           py36_0          70 KB
    python-leveldb-0.201       |   py36he6710b0_0          26 KB
    pywavelets-1.1.1           |   py36h7b6447c_0         3.5 MB
    pyyaml-5.3                 |   py36h7b6447c_0         180 KB
    scikit-image-0.16.2        |   py36h0573a6f_0        23.1 MB
    sqlite-3.31.1              |       h7b6447c_0         1.1 MB
    traitlets-4.3.3            |           py36_0         140 KB
    wcwidth-0.1.8              |             py_0          21 KB
    wheel-0.34.2               |           py36_0          51 KB
    ------------------------------------------------------------
                                           Total:        45.9 MB

The following packages will be UPDATED:

  jinja2                                        2.10.3-py_0 --> 2.11.1-py_0
  leveldb            conda-forge::leveldb-1.18-h6416369_10~ --> pkgs/main::leveldb-1.20-hf484d3e_1
  python-leveldb     conda-forge::python-leveldb-0.194-py3~ --> pkgs/main::python-leveldb-0.201-py36he6710b0_0
  sqlite                                  3.30.1-h7b6447c_0 --> 3.31.1-h7b6447c_0
  wheel                                       0.34.1-py36_0 --> 0.34.2-py36_0

The following packages will be SUPERSEDED by a higher-priority channel:

  backcall           conda-forge/noarch::backcall-0.1.0-py~ --> pkgs/main/linux-64::backcall-0.1.0-py36_0
  cloudpickle           conda-forge::cloudpickle-1.2.2-py_1 --> pkgs/main::cloudpickle-1.2.2-py_0
  cytoolz            conda-forge::cytoolz-0.10.1-py36h5169~ --> pkgs/main::cytoolz-0.10.1-py36h7b6447c_0
  dask-core                                     conda-forge --> pkgs/main
  decorator                                     conda-forge --> pkgs/main
  gflags             conda-forge::gflags-2.2.2-he1b5a44_10~ --> pkgs/main::gflags-2.2.2-he6710b0_0
  glog                   conda-forge::glog-0.4.0-he1b5a44_1 --> pkgs/main::glog-0.4.0-he6710b0_0
  imageio                                       conda-forge --> pkgs/main
  ipython                                       conda-forge --> pkgs/main
  ipython_genutils   conda-forge/noarch::ipython_genutils-~ --> pkgs/main/linux-64::ipython_genutils-0.2.0-py36_0
  jedi                                          conda-forge --> pkgs/main
  lmdb                  conda-forge::lmdb-0.9.24-h516909a_0 --> pkgs/main::lmdb-0.9.23-he6710b0_0
  networkx                                      conda-forge --> pkgs/main
  pandas             conda-forge::pandas-1.0.0-py36hb3f55d~ --> pkgs/main::pandas-1.0.0-py36h0573a6f_0
  parso                       conda-forge::parso-0.6.1-py_0 --> pkgs/main::parso-0.6.0-py_0
  pexpect                                       conda-forge --> pkgs/main
  pickleshare        conda-forge::pickleshare-0.7.5-py36_1~ --> pkgs/main::pickleshare-0.7.5-py36_0
  prompt_toolkit                                conda-forge --> pkgs/main
  ptyprocess         conda-forge/noarch::ptyprocess-0.6.0-~ --> pkgs/main/linux-64::ptyprocess-0.6.0-py36_0
  pygments                                      conda-forge --> pkgs/main
  python-gflags      conda-forge/noarch::python-gflags-3.1~ --> pkgs/main/linux-64::python-gflags-3.1.2-py36_0
  pytz                                          conda-forge --> pkgs/main
  pywavelets         conda-forge::pywavelets-1.1.1-py36hc1~ --> pkgs/main::pywavelets-1.1.1-py36h7b6447c_0
  pyyaml             conda-forge::pyyaml-5.3-py36h516909a_0 --> pkgs/main::pyyaml-5.3-py36h7b6447c_0
  scikit-image       conda-forge::scikit-image-0.16.2-py36~ --> pkgs/main::scikit-image-0.16.2-py36h0573a6f_0
  snappy               conda-forge::snappy-1.1.8-he1b5a44_1 --> pkgs/main::snappy-1.1.7-hbae5bb6_3
  toolz                                         conda-forge --> pkgs/main
  traitlets                                     conda-forge --> pkgs/main
  wcwidth                                       conda-forge --> pkgs/main
  yaml                   conda-forge::yaml-0.2.2-h516909a_1 --> pkgs/main::yaml-0.1.7-had09818_2


Proceed ([y]/n)? y


Downloading and Extracting Packages
pandas-1.0.0         | 8.6 MB    | #########################################################################################################################################################################6                                                        |  75% pandas-1.0.0         | 8.6 MB    | ################################################################################################################################################################################################################################# | 100% 
dask-core-2.10.1     | 562 KB    | ################################################################################################################################################################################################################################# | 100% 
traitlets-4.3.3      | 140 KB    | ################################################################################################################################################################################################################################# | 100% 
sqlite-3.31.1        | 1.1 MB    | ##############################################################################################################6                                                                                                                   |  49% sqlite-3.31.1        | 1.1 MB    | ################################################################################################################################################################################################################################# | 100% 
parso-0.6.0          | 69 KB     | ################################################################################################################################################################################################################################# | 100% 
jinja2-2.11.1        | 104 KB    | ################################################################################################################################################################################################################################# | 100% 
scikit-image-0.16.2  | 23.1 MB   | ################################################################################################################################################################################################################################# | 100% 
pywavelets-1.1.1     | 3.5 MB    | ################################################################################################################################################################################################################################# | 100% 
networkx-2.4         | 1.2 MB    | ################################################################################################################################################################################################################################# | 100% 
ipython-7.12.0       | 990 KB    | ################################################################################################################################################################################################################################# | 100% 
decorator-4.4.1      | 13 KB     | ################################################################################################################################################################################################################################# | 100% 
leveldb-1.20         | 253 KB    | ################################################################################################################################################################################################################################# | 100% 
pyyaml-5.3           | 180 KB    | ################################################################################################################################################################################################################################# | 100% 
prompt_toolkit-3.0.3 | 242 KB    | ################################################################################################################################################################################################################################# | 100% 
cytoolz-0.10.1       | 377 KB    | ################################################################################################################################################################################################################################# | 100% 
ptyprocess-0.6.0     | 23 KB     | ################################################################################################################################################################################################################################# | 100% 
pickleshare-0.7.5    | 13 KB     | ################################################################################################################################################################################################################################# | 100% 
jedi-0.16.0          | 757 KB    | ################################################################################################################################################################################################################################# | 100% 
python-gflags-3.1.2  | 70 KB     | ################################################################################################################################################################################################################################# | 100% 
ipython_genutils-0.2 | 39 KB     | ################################################################################################################################################################################################################################# | 100% 
python-leveldb-0.201 | 26 KB     | ################################################################################################################################################################################################################################# | 100% 
pexpect-4.8.0        | 82 KB     | ################################################################################################################################################################################################################################# | 100% 
wheel-0.34.2         | 51 KB     | ################################################################################################################################################################################################################################# | 100% 
glog-0.4.0           | 123 KB    | ################################################################################################################################################################################################################################# | 100% 
pygments-2.5.2       | 672 KB    | ################################################################################################################################################################################################################################# | 100% 
gflags-2.2.2         | 126 KB    | ################################################################################################################################################################################################################################# | 100% 
backcall-0.1.0       | 20 KB     | ################################################################################################################################################################################################################################# | 100% 
lmdb-0.9.23          | 418 KB    | ################################################################################################################################################################################################################################# | 100% 
wcwidth-0.1.8        | 21 KB     | ################################################################################################################################################################################################################################# | 100% 
imageio-2.6.1        | 3.2 MB    | ################################################################################################################################################################################################################################# | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done

(env_dlib) [rheza@rheza001-arch python-train]$ conda list
# packages in environment at /home/rheza/.conda/envs/env_dlib:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
absl-py                   0.9.0                    pypi_0    pypi
astor                     0.8.1                    pypi_0    pypi
backcall                  0.1.0                    py36_0  
boost                     1.70.0           py36h9de70de_1    conda-forge
boost-cpp                 1.70.0               h8e57a91_2    conda-forge
bzip2                     1.0.8                h7b6447c_0  
ca-certificates           2020.1.1                      0  
cachetools                4.0.0                    pypi_0    pypi
caffe                     1.0             py36hc3c8a5e_203    conda-forge
cairo                     1.16.0            hfb77d84_1002    conda-forge
certifi                   2019.11.28               py36_0  
chardet                   3.0.4                    pypi_0    pypi
click                     7.0                      py36_0  
cloudpickle               1.2.2                      py_0  
cycler                    0.10.0                   py36_0  
cytoolz                   0.10.1           py36h7b6447c_0  
dask-core                 2.10.1                     py_0  
dbus                      1.13.12              h746ee38_0  
decorator                 4.4.1                      py_0  
dlib                      19.19            py36h5245418_0    conda-forge
expat                     2.2.6                he6710b0_0  
ffmpeg                    4.1.3                h167e202_0    conda-forge
flask                     1.1.1                      py_0  
fontconfig                2.13.1            h86ecdb6_1001    conda-forge
freetype                  2.9.1                h8a8886c_1  
gast                      0.2.2                    pypi_0    pypi
gflags                    2.2.2                he6710b0_0  
giflib                    5.1.4                h14c3975_1  
glib                      2.63.1               h5a9c865_0  
glog                      0.4.0                he6710b0_0  
gmp                       6.1.2                h6c8ec71_1  
gnutls                    3.6.5             hd3a4fd2_1002    conda-forge
google-auth               1.11.0                   pypi_0    pypi
google-auth-oauthlib      0.4.1                    pypi_0    pypi
google-pasta              0.1.8                    pypi_0    pypi
graphite2                 1.3.13               h23475e2_0  
grpcio                    1.26.0                   pypi_0    pypi
gst-plugins-base          1.14.5               h0935bb2_0    conda-forge
gstreamer                 1.14.5               h36ae1b5_0    conda-forge
h5py                      2.10.0          nompi_py36h513d04c_101    conda-forge
harfbuzz                  2.4.0                h9f30f68_3    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
idna                      2.8                      pypi_0    pypi
imageio                   2.6.1                    py36_0  
imutils                   0.5.3                    py36_0    conda-forge
ipython                   7.12.0           py36h5ca1d4c_0  
ipython_genutils          0.2.0                    py36_0  
itsdangerous              1.1.0                    py36_0  
jasper                    1.900.1              hd497a04_4  
jedi                      0.16.0                   py36_0  
jinja2                    2.11.1                     py_0  
jpeg                      9c                h14c3975_1001    conda-forge
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.0                    pypi_0    pypi
kiwisolver                1.1.0            py36he6710b0_0  
lame                      3.100                h7b6447c_0  
ld_impl_linux-64          2.33.1               h53a641e_7  
leveldb                   1.20                 hf484d3e_1  
libblas                   3.8.0               14_openblas    conda-forge
libcblas                  3.8.0               14_openblas    conda-forge
libedit                   3.1.20181209         hc058e9b_0  
libffi                    3.2.1                hd88cf55_4  
libgcc-ng                 9.1.0                hdf63c60_0  
libgfortran-ng            7.3.0                hdf63c60_0  
libiconv                  1.15                 h63c8f33_5  
liblapack                 3.8.0               14_openblas    conda-forge
liblapacke                3.8.0               14_openblas    conda-forge
libopenblas               0.3.7                h5ec1e0e_6    conda-forge
libpng                    1.6.37               hbc83047_0  
libprotobuf               3.11.2               hd408876_0  
libstdcxx-ng              9.1.0                hdf63c60_0  
libtiff                   4.1.0                h2733197_0  
libuuid                   2.32.1            h14c3975_1000    conda-forge
libwebp                   1.0.1                h8e7db2f_0  
libxcb                    1.13                 h1bed415_1  
libxml2                   2.9.9                hea5a465_1  
lmdb                      0.9.23               he6710b0_0  
lxml                      4.2.4                    pypi_0    pypi
markdown                  3.1.1                    pypi_0    pypi
markupsafe                1.1.1            py36h7b6447c_0  
matplotlib                3.1.2                    py36_1    conda-forge
matplotlib-base           3.1.2            py36h250f245_1    conda-forge
ncurses                   6.1                  he6710b0_1  
nettle                    3.4.1             h1bed415_1002    conda-forge
networkx                  2.4                        py_0  
numpy                     1.17.5           py36h95a1406_0    conda-forge
oauthlib                  3.1.0                    pypi_0    pypi
olefile                   0.46                     py36_0  
opencv                    4.1.0            py36h3aa1047_6    conda-forge
openh264                  1.8.0                hd408876_0  
openssl                   1.1.1d               h7b6447c_3  
opt-einsum                3.1.0                    pypi_0    pypi
pandas                    1.0.0            py36h0573a6f_0  
parso                     0.6.0                      py_0  
pcre                      8.43                 he6710b0_0  
pexpect                   4.8.0                    py36_0  
pickleshare               0.7.5                    py36_0  
pillow                    7.0.0            py36hb39fc2d_0  
pip                       20.0.2                   py36_1  
pixman                    0.38.0               h7b6447c_0  
prompt_toolkit            3.0.3                      py_0  
protobuf                  3.11.2                   pypi_0    pypi
ptyprocess                0.6.0                    py36_0  
pyasn1                    0.4.8                    pypi_0    pypi
pyasn1-modules            0.2.8                    pypi_0    pypi
pygments                  2.5.2                      py_0  
pyparsing                 2.4.6                      py_0  
pyqt                      5.9.2            py36h05f1152_2  
pyqt5                     5.10.1                   pypi_0    pypi
python                    3.6.10               h0371630_0  
python-dateutil           2.8.1                      py_0  
python-gflags             3.1.2                    py36_0  
python-leveldb            0.201            py36he6710b0_0  
pytz                      2019.3                     py_0  
pywavelets                1.1.1            py36h7b6447c_0  
pyyaml                    5.3              py36h7b6447c_0  
qt                        5.9.7                h0c104cb_3    conda-forge
readline                  7.0                  h7b6447c_5  
requests                  2.22.0                   pypi_0    pypi
requests-oauthlib         1.3.0                    pypi_0    pypi
rsa                       4.0                      pypi_0    pypi
scikit-image              0.16.2           py36h0573a6f_0  
scipy                     1.4.1            py36h921218d_0    conda-forge
setuptools                45.1.0                   py36_0  
sip                       4.19.8                   pypi_0    pypi
six                       1.14.0                   py36_0  
snappy                    1.1.7                hbae5bb6_3  
sqlite                    3.31.1               h7b6447c_0  
tensorboard               2.1.0                    pypi_0    pypi
tensorflow                2.1.0                    pypi_0    pypi
tensorflow-estimator      2.1.0                    pypi_0    pypi
termcolor                 1.1.0                    pypi_0    pypi
tk                        8.6.10               hed695b0_0    conda-forge
toolz                     0.10.0                     py_0  
tornado                   6.0.3            py36h7b6447c_0  
traitlets                 4.3.3                    py36_0  
urllib3                   1.25.8                   pypi_0    pypi
wcwidth                   0.1.8                      py_0  
werkzeug                  0.16.1                     py_0  
wheel                     0.34.2                   py36_0  
wrapt                     1.11.2                   pypi_0    pypi
x264                      1!152.20180806       h7b6447c_0  
xorg-kbproto              1.0.7             h14c3975_1002    conda-forge
xorg-libice               1.0.10               h516909a_0    conda-forge
xorg-libsm                1.2.3             h84519dc_1000    conda-forge
xorg-libx11               1.6.9                h516909a_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-renderproto          0.11.1            h14c3975_1002    conda-forge
xorg-xextproto            7.3.0             h14c3975_1002    conda-forge
xorg-xproto               7.0.31            h14c3975_1007    conda-forge
xz                        5.2.4                h14c3975_4  
yaml                      0.1.7                had09818_2  
zlib                      1.2.11               h7b6447c_3  
zstd                      1.3.7                h0b5b093_0

@marcelotrevisani
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Are you using python 3.6 right?
So, try to be specific when installing cafe then, just to force to get the right one

conda install caffe=1.0=py36hff8c9ee_204

@Rheza001
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Rheza001 commented Feb 5, 2020 •
edited
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okay. trying once more

EDIT: or i can just use conda update -c conda-forge caffe. Updating from here...

@marcelotrevisani
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I create an env from scratch and it worked fine
conda create -n test-env-caffe caffe=1.0=py36hff8c9ee_204

@Rheza001
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Rheza001 commented Feb 5, 2020 •
edited
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okay, the library is updated. now trying to run the command...

EDIT: now the error says: ImportError: libprotobuf.so.14: cannot open shared object file: No such file or directory

Edit: You know what, let me give you the full error trace:

(env_dlib) [rheza@rheza001-arch python-train]$ /bin/bash ~/python-train/caffe/data/CustomDataset/create_data.sh 
Failed to include caffe_pb2, things might go wrong!
Traceback (most recent call last):
  File "/home/rheza/python-train/caffe/data/CustomDataset/../../scripts/create_annoset.py", line 7, in <module>
    from caffe.proto import caffe_pb2
  File "/home/rheza/.conda/envs/env_dlib/lib/python3.6/site-packages/caffe/__init__.py", line 4, in <module>
    from .proto.caffe_pb2 import TRAIN, TEST
  File "/home/rheza/.conda/envs/env_dlib/lib/python3.6/site-packages/caffe/proto/caffe_pb2.py", line 6, in <module>
    from google.protobuf import descriptor as _descriptor
  File "/home/rheza/.conda/envs/env_dlib/lib/python3.6/site-packages/google/protobuf/descriptor.py", line 46, in <module>
    from google.protobuf.pyext import _message
ImportError: libprotobuf.so.14: cannot open shared object file: No such file or directory

@marcelotrevisani
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Could you please share the full script and data which you are using?

@marcelotrevisani
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marcelotrevisani commented Feb 5, 2020 •
edited
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I just realized that you installed some packages from pypi
could you please try to create the env from scratch? conda create -n test-env-caffe caffe=1.0=py36hff8c9ee_204

because if you install some things from pypi and other from conda you might mess with your environment

@Rheza001
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Rheza001 commented Feb 5, 2020 •
edited
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Creating from scratch...

Edit: This took a long time...

@marcelotrevisani
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Creating from scratch...

Edit: This took a long time...

that is odd, it took just a couple of seconds here. You might try to update your conda as well
conda update -n base conda

Did it work?

@Rheza001
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Rheza001 commented Feb 6, 2020 •
edited
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Okay. It fixed now. Thank you for your help!

Creating from scratch...
Edit: This took a long time...

that is odd, it took just a couple of seconds here. You might try to update your conda as well
conda update -n base conda

Did it work?

the problem is my internet here is very slow, so it took a while

@Rheza001 Rheza001 closed this as completed Feb 6, 2020
@marcelotrevisani
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Okay. It fixed now. Thank you for your help!

Creating from scratch...
Edit: This took a long time...

that is odd, it took just a couple of seconds here. You might try to update your conda as well
conda update -n base conda
Did it work?

the problem is my internet here is very slow, so it took a while

I am glad that it helps!
Thanks for reporting it!

@marcelotrevisani marcelotrevisani mentioned this issue Feb 7, 2020
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