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needed to uninstall a package in order to install libmamba solver, then it added same package & version back #11789

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Tracked by #109
gmjen opened this issue Sep 1, 2022 · 2 comments
Closed
3 tasks done
Tracked by #109
Labels
backlog issue has been triaged but has not been earmarked for any upcoming release locked [bot] locked due to inactivity pending::feedback indicates we are waiting on feedback from the user solver::behavior pertains to the solver's behavior stale::closed [bot] closed after being marked as stale stale [bot] marked as stale due to inactivity type::support neither a bug nor feature, is really just a user having questions or difficulty somewhere

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@gmjen
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gmjen commented Sep 1, 2022

Checklist

  • I added a descriptive title
  • I searched for other issues and couldn't find a solution or duplication
  • I looked at the README.md and didn't see anything to help

What happened?

When I tried to install the libmamba solver, I got a number of conflicts. Many of them were bzip2 related, so I ran
conda uninstall bzip2

This uninstalled not only bzip2-1.0.8 but a number of other packages. Other packages were also upgraded when I did this.

After running conda uninstall bzip2, I was able to run conda install -n base conda-libmamba-solver

In reviewing the terminal, I noticed that as part of that, conda reinstalled bzip2-1.0.8 again.

Unsure if this is really a bug, as I had an overpulluted base environment, but it might prevent some people from using libmamba solver when it goes live.

Conda info

% conda info
     active environment : base
    active env location : /Users/gregjennings/opt/anaconda3
            shell level : 1
       user config file : /Users/gregjennings/.condarc
 populated config files : /Users/gregjennings/.condarc
          conda version : 4.14.0
    conda-build version : not installed
         python version : 3.9.7.final.0
       virtual packages : __osx=10.16=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/gregjennings/opt/anaconda3  (writable)
      conda av data dir : /Users/gregjennings/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/numba/osx-64
                          https://conda.anaconda.org/numba/noarch
                          https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/gregjennings/opt/anaconda3/pkgs
                          /Users/gregjennings/.conda/pkgs
       envs directories : /Users/gregjennings/opt/anaconda3/envs
                          /Users/gregjennings/.conda/envs
               platform : osx-64
             user-agent : conda/4.14.0 requests/2.28.1 CPython/3.9.7 Darwin/21.1.0 OSX/10.16
                UID:GID : 502:20
             netrc file : None
           offline mode : False

Conda config

% conda config --show-sources
==> /Users/gregjennings/.condarc <==
channels:
  - numba
  - defaults

Conda list

% conda list --show-channel-urls                                                         
# packages in environment at /Users/gregjennings/opt/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0            py39hecd8cb5_0    defaults
aiohttp                   3.8.1            py39hca72f7f_1    defaults
aiosignal                 1.2.0              pyhd3eb1b0_0    defaults
anaconda-client           1.10.0           py39hecd8cb5_0    defaults
anaconda-navigator        2.2.0            py39hecd8cb5_0    defaults
anaconda-project          0.10.1             pyhd3eb1b0_0    defaults
anyio                     3.5.0            py39hecd8cb5_0    defaults
appdirs                   1.4.4              pyhd3eb1b0_0    defaults
appnope                   0.1.2           py39hecd8cb5_1001    defaults
argon2-cffi               21.3.0             pyhd3eb1b0_0    defaults
argon2-cffi-bindings      21.2.0           py39hca72f7f_0    defaults
asttokens                 2.0.5              pyhd3eb1b0_0    defaults
async-timeout             4.0.1              pyhd3eb1b0_0    defaults
attrs                     21.4.0             pyhd3eb1b0_0    defaults
babel                     2.9.1              pyhd3eb1b0_0    defaults
backcall                  0.2.0              pyhd3eb1b0_0    defaults
backports                 1.1                pyhd3eb1b0_0    defaults
backports.functools_lru_cache 1.6.4              pyhd3eb1b0_0    defaults
backports.tempfile        1.0                pyhd3eb1b0_1    defaults
backports.weakref         1.0.post1                  py_1    defaults
beautifulsoup4            4.10.0             pyh06a4308_0    anaconda
bleach                    4.1.0              pyhd3eb1b0_0    defaults
brotlipy                  0.7.0           py39h9ed2024_1003    defaults
bzip2                     1.0.8                h1de35cc_0    defaults
c-ares                    1.18.1               hca72f7f_0    defaults
ca-certificates           2022.07.19           hecd8cb5_0    defaults
certifi                   2022.6.15        py39hecd8cb5_0    defaults
cffi                      1.15.1           py39hc55c11b_0    defaults
chardet                   4.0.0           py39hecd8cb5_1003    defaults
charset-normalizer        2.0.4              pyhd3eb1b0_0    defaults
click                     8.0.3              pyhd3eb1b0_0    anaconda
clyent                    1.2.2            py39hecd8cb5_1    defaults
conda                     4.14.0           py39hecd8cb5_0    defaults
conda-content-trust       0.1.3            py39hecd8cb5_0    defaults
conda-env                 2.6.0                         1    defaults
conda-libmamba-solver     22.8.1           py39hecd8cb5_0    defaults
conda-pack                0.6.0              pyhd3eb1b0_0    defaults
conda-package-handling    1.8.1            py39hca72f7f_0    defaults
conda-repo-cli            1.0.5            py39hecd8cb5_0    defaults
conda-token               0.3.0              pyhd3eb1b0_0    defaults
conda-verify              3.4.2                      py_1    defaults
cryptography              37.0.1           py39hf6deb26_0    defaults
cytoolz                   0.11.0           py39h9ed2024_0    defaults
debugpy                   1.5.1            py39he9d5cce_0    defaults
decorator                 5.1.1              pyhd3eb1b0_0    defaults
defusedxml                0.7.1              pyhd3eb1b0_0    defaults
entrypoints               0.4              py39hecd8cb5_0    defaults
executing                 0.8.3              pyhd3eb1b0_0    defaults
freetype                  2.11.0               hd8bbffd_0    defaults
frozenlist                1.2.0            py39hca72f7f_0    defaults
future                    0.18.2           py39hecd8cb5_1    defaults
gettext                   0.21.0               h7535e17_0    defaults
giflib                    5.2.1                haf1e3a3_0    defaults
glib                      2.69.1               h8346a28_1    defaults
gst-plugins-base          1.14.0               h4180768_2    defaults
gstreamer                 1.14.0               h0fc69c2_2    defaults
icu                       58.2                 h0a44026_3    defaults
idna                      3.3                pyhd3eb1b0_0    defaults
importlib-metadata        4.11.3           py39hecd8cb5_0    defaults
importlib_metadata        4.11.3               hd3eb1b0_0    defaults
ipykernel                 6.9.1            py39hecd8cb5_0    defaults
ipython                   8.4.0            py39hecd8cb5_0    defaults
ipython_genutils          0.2.0              pyhd3eb1b0_1    defaults
ipywidgets                7.6.5              pyhd3eb1b0_1    defaults
jedi                      0.18.1           py39hecd8cb5_1    defaults
jinja2                    3.0.3              pyhd3eb1b0_0    defaults
jpeg                      9e                   hca72f7f_0    defaults
json5                     0.9.6              pyhd3eb1b0_0    defaults
jsonschema                4.4.0            py39hecd8cb5_0    defaults
jupyter_client            7.3.4            py39hecd8cb5_0    defaults
jupyter_core              4.10.0           py39hecd8cb5_0    defaults
jupyter_server            1.13.5             pyhd3eb1b0_0    defaults
jupyterlab                3.3.2              pyhd3eb1b0_0    defaults
jupyterlab_pygments       0.1.2                      py_0    defaults
jupyterlab_server         2.12.0           py39hecd8cb5_0    defaults
jupyterlab_widgets        1.0.0              pyhd3eb1b0_1    defaults
krb5                      1.19.2               hcd88c3b_0    defaults
lcms2                     2.12                 hf1fd2bf_0    defaults
lerc                      3.0                  he9d5cce_0    defaults
libarchive                3.5.2                ha0e9c3a_0    defaults
libclang                  12.0.0          default_hbc2896b_2    defaults
libcurl                   7.84.0               h6dfd666_0    defaults
libcxx                    12.0.0               h2f01273_0    defaults
libdeflate                1.8                  h9ed2024_5    defaults
libedit                   3.1.20210910         hca72f7f_0    defaults
libev                     4.33                 h9ed2024_1    defaults
libffi                    3.3                  hb1e8313_2    defaults
libiconv                  1.16                 hca72f7f_2    defaults
libllvm12                 12.0.1               hd011deb_2    conda-forge
libmamba                  0.24.0               hf1b0957_0    defaults
libmambapy                0.24.0           py39haf03e11_0    defaults
libnghttp2                1.46.0               ha29bfda_0    defaults
libpng                    1.6.37               ha441bb4_0    defaults
libpq                     12.9                 h1c9f633_3    defaults
libsodium                 1.0.18               h1de35cc_0    defaults
libsolv                   0.7.20               h8346a28_0    defaults
libssh2                   1.10.0               h0a4fc7d_0    defaults
libtiff                   4.4.0                h2ef1027_0    defaults
libwebp                   1.2.2                h56c3ce4_0    defaults
libwebp-base              1.2.2                hca72f7f_0    defaults
libxml2                   2.9.14               hbf8cd5e_0    defaults
libxslt                   1.1.35               h5b33f42_0    defaults
llvm-openmp               12.0.0               h0dcd299_1    defaults
lz4-c                     1.9.3                h23ab428_1    defaults
markupsafe                2.1.1            py39hca72f7f_0    defaults
matplotlib-inline         0.1.6            py39hecd8cb5_0    defaults
mistune                   0.8.4           py39h9ed2024_1000    defaults
multidict                 5.2.0            py39hca72f7f_2    defaults
navigator-updater         0.2.1            py39hecd8cb5_0    defaults
nbclassic                 0.3.5              pyhd3eb1b0_0    defaults
nbclient                  0.5.13           py39hecd8cb5_0    defaults
nbconvert                 6.3.0            py39hecd8cb5_0    defaults
nbformat                  5.3.0            py39hecd8cb5_0    defaults
ncurses                   6.3                  hca72f7f_3    defaults
nest-asyncio              1.5.5            py39hecd8cb5_0    defaults
notebook                  6.4.12           py39hecd8cb5_0    defaults
nspr                      4.33                 he9d5cce_0    defaults
nss                       3.74                 h47edf6a_0    defaults
openssl                   1.1.1q               hca72f7f_0    defaults
packaging                 21.3               pyhd3eb1b0_0    defaults
pandocfilters             1.5.0              pyhd3eb1b0_0    defaults
parso                     0.8.3              pyhd3eb1b0_0    defaults
pathlib                   1.0.1              pyhd3eb1b0_1    defaults
pcre                      8.45                 h23ab428_0    defaults
pexpect                   4.8.0              pyhd3eb1b0_3    defaults
pickleshare               0.7.5           pyhd3eb1b0_1003    defaults
pillow                    9.2.0            py39hde71d04_1    defaults
pip                       22.1.2           py39hecd8cb5_0    defaults
ply                       3.11             py39hecd8cb5_0    defaults
prometheus_client         0.14.1           py39hecd8cb5_0    defaults
prompt-toolkit            3.0.20             pyhd3eb1b0_0    defaults
psutil                    5.9.0            py39hca72f7f_0    defaults
ptyprocess                0.7.0              pyhd3eb1b0_2    defaults
pure_eval                 0.2.2              pyhd3eb1b0_0    defaults
pycosat                   0.6.3            py39h9ed2024_0    defaults
pycparser                 2.21               pyhd3eb1b0_0    defaults
pyee                      7.0.4              pyh9f0ad1d_0    conda-forge
pygments                  2.11.2             pyhd3eb1b0_0    defaults
pyjwt                     2.4.0            py39hecd8cb5_0    defaults
pyopenssl                 22.0.0             pyhd3eb1b0_0    defaults
pyparsing                 3.0.9            py39hecd8cb5_0    defaults
pyppeteer                 0.2.2                      py_1    conda-forge
pyqt                      5.15.7           py39he9d5cce_0    defaults
pyqt5-sip                 12.11.0          py39he9d5cce_0    defaults
pyrsistent                0.18.0           py39hca72f7f_0    defaults
pysocks                   1.7.1            py39hecd8cb5_0    defaults
python                    3.9.7                h88f2d9e_1    defaults
python-dateutil           2.8.2              pyhd3eb1b0_0    defaults
python-fastjsonschema     2.16.2           py39hecd8cb5_0    defaults
python.app                3                py39hca72f7f_0    defaults
python_abi                3.9                      2_cp39    conda-forge
pytz                      2022.1           py39hecd8cb5_0    defaults
pyyaml                    6.0              py39hca72f7f_1    defaults
pyzmq                     23.2.0           py39he9d5cce_0    defaults
qt-main                   5.15.2               h719ae48_7    defaults
qt-webengine              5.15.9               h90a370e_4    defaults
qtpy                      2.2.0            py39hecd8cb5_0    defaults
qtwebkit                  5.212                h24dc246_4    defaults
readline                  8.1.2                hca72f7f_1    defaults
reproc                    14.2.4               he9d5cce_1    defaults
reproc-cpp                14.2.4               he9d5cce_1    defaults
requests                  2.28.1           py39hecd8cb5_0    defaults
ruamel_yaml               0.15.100         py39h9ed2024_0    defaults
send2trash                1.8.0              pyhd3eb1b0_1    defaults
setuptools                63.4.1           py39hecd8cb5_0    defaults
sip                       6.6.2            py39he9d5cce_0    defaults
six                       1.16.0             pyhd3eb1b0_1    defaults
sniffio                   1.2.0            py39hecd8cb5_1    defaults
soupsieve                 2.3.1              pyhd3eb1b0_0    defaults
sqlite                    3.39.2               h707629a_0    defaults
stack_data                0.2.0              pyhd3eb1b0_0    defaults
terminado                 0.13.1           py39hecd8cb5_0    defaults
testpath                  0.6.0            py39hecd8cb5_0    defaults
tk                        8.6.12               h5d9f67b_0    defaults
toml                      0.10.2             pyhd3eb1b0_0    defaults
toolz                     0.11.2             pyhd3eb1b0_0    defaults
tornado                   6.1              py39h9ed2024_0    defaults
tqdm                      4.64.0           py39hecd8cb5_0    defaults
traitlets                 5.1.1              pyhd3eb1b0_0    defaults
typing-extensions         4.3.0            py39hecd8cb5_0    defaults
typing_extensions         4.3.0            py39hecd8cb5_0    defaults
tzdata                    2022a                hda174b7_0    defaults
ujson                     5.4.0            py39he9d5cce_0    defaults
urllib3                   1.26.11          py39hecd8cb5_0    defaults
wcwidth                   0.2.5              pyhd3eb1b0_0    defaults
webencodings              0.5.1            py39hecd8cb5_1    defaults
websocket-client          0.58.0           py39hecd8cb5_4    defaults
websockets                8.1              py39hcbf5805_3    conda-forge
wheel                     0.37.1             pyhd3eb1b0_0    defaults
widgetsnbextension        3.5.2            py39hecd8cb5_0    defaults
xz                        5.2.5                hca72f7f_1    defaults
yaml                      0.2.5                haf1e3a3_0    defaults
yaml-cpp                  0.7.0                he9d5cce_1    defaults
yarl                      1.8.1            py39hca72f7f_0    defaults
zeromq                    4.3.4                h23ab428_0    defaults
zipp                      3.8.0            py39hecd8cb5_0    defaults
zlib                      1.2.12               h4dc903c_2    defaults
zstd                      1.5.2                hcb37349_0    defaults

Log file & additional context

(base) gregjennings@Gregs-MacBook-Pro packages-clustering % conda install -n base conda-libmamba-solver
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: | 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
Examining conflict for matplotlib-base imageio statsmodels mkl_fft nltk pandas scikit-image mkl_random bokeh pywavelets pytables daal4py bkcharts libgfortran glue-vispy-viewers echo numexpr matplotlib h5py seaborn scipy numpy tifffile imagecodecs astropy patsy fast-histogram hdf5 dask cfitsio mpl-scatter-density numpy-base bottleneck scikit-learn numba networkx glue-core mkl-service: : 404it [1:00:43,  1.Examining conflict for matplotlib-base imageio statsmodels mkl_fft nltk pandas scikit-image mkl_random bokeh pywavelets pytables daal4py bkcharts libgfortran glue-vispy-viewers echo numexpr matplotlib h5py seaborn scipy numpy tifffile imagecodecs astropy patsy fast-histogram hdf5 dask cfitsio mpl-scatter-density numpy-base bottleneck scikit-learn numba networkx glue-core mkl-service: : 405it [1:00:43,  1.Examining conflict for glueviz glue-vispy-viewers glue-core: : 405it [1:01:19,  1.20it/s]                                                                                                                                                                                                                                                                                                                               Examining conflict for matplotlib-base imageio statsmodels mkl_fft nltk pandas scikit-image mkl_random bokeh pywavelets pytables daal4py bkcharts glue-vispy-viewers echo numexpr matplotlib pyerfa h5py seaborn scipy numpy tifffile imagecodecs astropy patsy fast-histogram scikit-learn-intelex dask mpl-scatter-density numpy-base bottleneck scikit-learn numba networkx glue-core mkl-service: : 406it [1:01:19, Examining conflict for matplotlib-base imageio statsmodels mkl_fft nltk pandas scikit-image mkl_random bokeh pywavelets pytables daal4py bkcharts glue-vispy-viewers echo numexpr matplotlib pyerfa h5py seaborn scipy numpy tifffile imagecodecs astropy patsy fast-histogram scikit-learn-intelex dask mpl-scatter-density numpy-base bottleneck scikit-learn numba networkx glue-core mkl-service: : 407it [1:01:19, Examining conflict for glue-vispy-viewers astropy glue-core: : 407it [1:01:55,  7.15s/it]                                                                                                                                                                                                                                                                                                                               Examining conflict for anyio numpydoc typing_extensions mypy_extensions flake8 sphinx importlib-metadata pyjwt typing-extensions spyder arrow black aiohttp kiwisolver jsonschema bokeh: : 423it [1:02:37,  Examining conflict for python-lsp-black python-lsp-server pyls-spyder: : 424it [1:02:39,  1.45s/it]                                                                                                      failed                                                                          \                   \ 

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - alabaster -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - anaconda==2021.11 -> python[version='3.7.11|3.8.12|3.9.7',build='h88f2d9e_1|h88f2d9e_0']
  - appdirs -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - argon2-cffi -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0']
  - astroid -> python[version='2.6.*|2.7.*|3.3.*']
  - async-timeout -> python[version='>=3.10,<3.11.0a0']
  - atomicwrites -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - attrs -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - backcall -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0']
  - backports -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - backports.functools_lru_cache -> python[version='>=2.7,<2.8.0a0']
  - backports.shutil_get_terminal_size -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - bkcharts -> python[version='>=3.7.1,<3.8.0a0']
  - brotlipy -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0']
  - cached-property -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - conda-content-trust -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
  - conda-libmamba-solver -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0']
  - conda-verify -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - contextlib2 -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - daal4py -> python[version='>=2.7,<2.8.0a0']
  - defusedxml -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - get_terminal_size -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - glob2 -> python[version='>=2.7,<2.8.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
  - glue-vispy-viewers -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - h5py -> python[version='<3']
  - heapdict -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0']
  - html5lib -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - imagecodecs -> python[version='>=2.7,<2.8.0a0']
  - importlib_metadata -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0']
  - ipython_genutils -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - ipywidgets -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - jdcal -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - networkx -> python[version='>=3.7.1,<3.8.0a0']
  - olefile -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - path -> python[version='>=2.7,<2.8.0a0']
  - pathlib -> python[version='>=2.7,<2.8.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - pexpect -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.5,<3.6.0a0']
  - ptyprocess -> python[version='>=2.7,<2.8.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
  - pyflakes -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - pyrsistent -> python[version='>=3.5,<3.6.0a0']
  - python-dateutil -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - send2trash -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0']
  - singledispatch -> python[version='2.6.*|2.7.*|3.3.*|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=2.7,<2.8.0a0']
  - sniffio -> python[version='>=3,<3.7']
  - sortedcollections -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - sphinxcontrib-websupport -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - tblib -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
  - tenacity -> python[version='>=3.5,<3.6.0a0']
  - text-unidecode -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0']
  - tornado -> python[version='2.6.*|2.7.*|3.3.*']
  - watchdog -> python[version='>=3.5,<3.6.0a0']
  - wcwidth -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - wheel -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.5,<3.6.0a0']
  - wurlitzer -> python[version='<3.4']
  - xlrd -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
  - yapf -> python[version='>=2.7,<2.8.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
  - zope.event -> python[version='>=3.5,<3.6.0a0']

Your python: python=3.9

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with a past
explicit spec that is not an explicit spec in this operation (conda):

  - conda-libmamba-solver -> conda[version='>=4.12|>=4.13']

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package libgfortran conflicts for:
cfitsio -> libgfortran[version='5.*|>=3.0.1,<4.0.0.a0']
numba -> numpy[version='>=1.18,!=1.22.0,!=1.22.1,!=1.22.2,<1.23'] -> libgfortran[version='5.*|>=3.0.1,<4.0.0.a0']
... + 38 more packages (removed to fit comment length)

Package bzip2 conflicts for:
chardet -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
pandocfilters -> python[version='!=3.0,!=3.1,!=3.2,!=3.3'] -> bzip2[version='>=1.0.8,<2.0a0']
backports -> python -> bzip2[version='>=1.0.8,<2.0a0']
olefile -> python -> bzip2[version='>=1.0.8,<2.0a0']
cffi -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
pywavelets -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
jinja2-time -> python -> bzip2[version='>=1.0.8,<2.0a0']
mistune -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
matplotlib -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
mkl_fft -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
...(this continues for 300 more packages but I deleted to fit the comment length)


......


(base) gregjennings@Gregs-MacBook-Pro packages-clustering % conda uninstall bzip2
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/gregjennings/opt/anaconda3

  removed specs:
    - bzip2


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    anaconda-client-1.10.0     |   py39hecd8cb5_0         149 KB
    backports-1.1              |     pyhd3eb1b0_0           4 KB
    cffi-1.15.1                |   py39hc55c11b_0         219 KB
    conda-content-trust-0.1.3  |   py39hecd8cb5_0          71 KB
    glib-2.69.1                |       h8346a28_1         2.7 MB
    gst-plugins-base-1.14.0    |       h4180768_2         1.5 MB
    gstreamer-1.14.0           |       h0fc69c2_2         1.1 MB
    jupyter_client-7.3.4       |   py39hecd8cb5_0         194 KB
    libclang-12.0.0            |default_hbc2896b_2         6.1 MB
    libpq-12.9                 |       h1c9f633_3         2.0 MB
    libwebp-base-1.2.2         |       hca72f7f_0         393 KB
    matplotlib-inline-0.1.6    |   py39hecd8cb5_0          17 KB
    nbconvert-6.3.0            |   py39hecd8cb5_0         484 KB
    notebook-6.4.12            |   py39hecd8cb5_0         4.2 MB
    nspr-4.33                  |       he9d5cce_0         228 KB
    nss-3.74                   |       h47edf6a_0         1.8 MB
    pcre-8.45                  |       h23ab428_0         181 KB
    pillow-9.2.0               |   py39hde71d04_1         624 KB
    prometheus_client-0.14.1   |   py39hecd8cb5_0          90 KB
    psutil-5.9.0               |   py39hca72f7f_0         339 KB
    pyparsing-3.0.9            |   py39hecd8cb5_0         149 KB
    pyqt-5.15.7                |   py39he9d5cce_0         3.9 MB
    pyqt5-sip-12.11.0          |   py39he9d5cce_0          73 KB
    python-fastjsonschema-2.16.2|   py39hecd8cb5_0         231 KB
    qt-main-5.15.2             |       h719ae48_7        38.0 MB
    qt-webengine-5.15.9        |       h90a370e_4        48.2 MB
    qtpy-2.2.0                 |   py39hecd8cb5_0          86 KB
    qtwebkit-5.212             |       h24dc246_4         9.8 MB
    sip-6.6.2                  |   py39he9d5cce_0         417 KB
    tqdm-4.64.0                |   py39hecd8cb5_0         126 KB
    typing-extensions-4.3.0    |   py39hecd8cb5_0           9 KB
    typing_extensions-4.3.0    |   py39hecd8cb5_0          42 KB
    ujson-5.4.0                |   py39he9d5cce_0          48 KB
    urllib3-1.26.11            |   py39hecd8cb5_0         185 KB
    ------------------------------------------------------------
                                           Total:       123.7 MB

The following NEW packages will be INSTALLED:

  argon2-cffi-bindi~ pkgs/main/osx-64::argon2-cffi-bindings-21.2.0-py39hca72f7f_0
  asttokens          pkgs/main/noarch::asttokens-2.0.5-pyhd3eb1b0_0
  executing          pkgs/main/noarch::executing-0.8.3-pyhd3eb1b0_0
  gettext            pkgs/main/osx-64::gettext-0.21.0-h7535e17_0
  glib               pkgs/main/osx-64::glib-2.69.1-h8346a28_1
  gst-plugins-base   pkgs/main/osx-64::gst-plugins-base-1.14.0-h4180768_2
  gstreamer          pkgs/main/osx-64::gstreamer-1.14.0-h0fc69c2_2
  libclang           pkgs/main/osx-64::libclang-12.0.0-default_hbc2896b_2
  libpq              pkgs/main/osx-64::libpq-12.9-h1c9f633_3
  nspr               pkgs/main/osx-64::nspr-4.33-he9d5cce_0
  nss                pkgs/main/osx-64::nss-3.74-h47edf6a_0
  pcre               pkgs/main/osx-64::pcre-8.45-h23ab428_0
  pure_eval          pkgs/main/noarch::pure_eval-0.2.2-pyhd3eb1b0_0
  pyqt5-sip          pkgs/main/osx-64::pyqt5-sip-12.11.0-py39he9d5cce_0
  python-fastjsonsc~ pkgs/main/osx-64::python-fastjsonschema-2.16.2-py39hecd8cb5_0
  qt-main            pkgs/main/osx-64::qt-main-5.15.2-h719ae48_7
  qt-webengine       pkgs/main/osx-64::qt-webengine-5.15.9-h90a370e_4
  qtwebkit           pkgs/main/osx-64::qtwebkit-5.212-h24dc246_4
  stack_data         pkgs/main/noarch::stack_data-0.2.0-pyhd3eb1b0_0
  websocket-client   pkgs/main/osx-64::websocket-client-0.58.0-py39hecd8cb5_4

The following packages will be REMOVED:

  alabaster-0.7.12-pyhd3eb1b0_0
  anaconda-2021.11-py39_0
  applaunchservices-0.2.1-pyhd3eb1b0_0
  appscript-1.1.2-py39h9ed2024_0
  argh-0.26.2-py39hecd8cb5_0
  arrow-0.13.1-py39hecd8cb5_0
  asn1crypto-1.4.0-py_0
  astroid-2.6.6-py39hecd8cb5_0
  astropy-4.3.1-py39hf9932de_0
  async_generator-1.10-pyhd3eb1b0_0
  atomicwrites-1.4.0-py_0
  autopep8-1.5.7-pyhd3eb1b0_0
  backports.shutil_get_terminal_size-1.0.0-pyhd3eb1b0_3
  binaryornot-0.4.4-pyhd3eb1b0_1
  bitarray-2.3.0-py39h9ed2024_1
  bkcharts-0.2-py39hecd8cb5_0
  black-19.10b0-py_0
  blas-1.0-mkl
  blosc-1.21.0-h2842e9f_0
  bokeh-2.4.1-py39hecd8cb5_0
  boto-2.49.0-py39hecd8cb5_0
  bottleneck-1.3.2-py39he3068b8_1
  brotli-1.0.9-hb1e8313_2
  brunsli-0.1-h23ab428_0
  bzip2-1.0.8-h1de35cc_0
  c-ares-1.17.1-h9ed2024_0
  cached-property-1.5.2-py_0
  cctools-973.0.1-hd9211c8_2
  cctools_osx-64-973.0.1-h3e07e27_2
  cfitsio-3.470-hee0f690_6
  charls-2.2.0-h23ab428_0
  cloudpickle-2.0.0-pyhd3eb1b0_0
  colorama-0.4.4-pyhd3eb1b0_0
  conda-build-3.22.0-py39h6e9494a_2
  contextlib2-0.6.0.post1-pyhd3eb1b0_0
  cookiecutter-1.7.2-pyhd3eb1b0_0
  curl-7.78.0-h7bc2e8c_0
  cycler-0.10.0-py39hecd8cb5_0
  cython-0.29.24-py39he9d5cce_0
  daal4py-2021.3.0-py39h01d92e1_0
  dal-2021.3.0-hecd8cb5_555
  dask-2021.10.0-pyhd3eb1b0_0
  dask-core-2021.10.0-pyhd3eb1b0_0
  dataclasses-0.8-pyh6d0b6a4_7
  diff-match-patch-20200713-pyhd3eb1b0_0
  dill-0.3.4-pyhd3eb1b0_0
  distributed-2021.10.0-py39hecd8cb5_0
  docutils-0.17.1-py39hecd8cb5_1
  echo-0.5-pyhd3eb1b0_0
  et_xmlfile-1.1.0-py39hecd8cb5_0
  fast-histogram-0.9-py39he3068b8_0
  fastcache-1.1.0-py39h9ed2024_0
  filelock-3.3.1-pyhd3eb1b0_1
  flake8-3.9.2-pyhd3eb1b0_0
  flask-1.1.2-pyhd3eb1b0_0
  fonttools-4.25.0-pyhd3eb1b0_0
  fsspec-2021.8.1-pyhd3eb1b0_0
  get_terminal_size-1.0.0-h7520d66_0
  gevent-21.8.0-py39h9ed2024_1
  glob2-0.7-pyhd3eb1b0_0
  glue-core-1.0.1-py39hecd8cb5_1
  glue-vispy-viewers-0.12.2-py_0
  glueviz-1.0.0-0
  gmp-6.2.1-h23ab428_2
  gmpy2-2.0.8-py39h4b98818_3
  greenlet-1.1.1-py39h23ab428_0
  h5py-3.2.1-py39h90fc2a2_0
  hdf5-1.10.6-hdbbcd12_0
  heapdict-1.0.1-pyhd3eb1b0_0
  html5lib-1.1-pyhd3eb1b0_0
  imagecodecs-2021.8.26-py39ha952a84_0
  imageio-2.9.0-pyhd3eb1b0_0
  imagesize-1.2.0-pyhd3eb1b0_0
  importlib-metadata-4.8.1-py39hecd8cb5_0
  importlib_metadata-4.8.1-hd3eb1b0_0
  inflection-0.5.1-py39hecd8cb5_0
  iniconfig-1.1.1-pyhd3eb1b0_0
  intel-openmp-2021.4.0-hecd8cb5_3538
  intervaltree-3.1.0-pyhd3eb1b0_0
  isort-5.9.3-pyhd3eb1b0_0
  itsdangerous-2.0.1-pyhd3eb1b0_0
  jbig-2.1-h4d881f8_0
  jdcal-1.4.1-pyhd3eb1b0_0
  jinja2-time-0.2.0-pyhd3eb1b0_2
  joblib-1.1.0-pyhd3eb1b0_0
  jupyter-1.0.0-py39hecd8cb5_7
  jupyter_console-6.4.0-pyhd3eb1b0_0
  jxrlib-1.1-haf1e3a3_2
  keyring-23.1.0-py39hecd8cb5_0
  kiwisolver-1.3.1-py39h23ab428_0
  lazy-object-proxy-1.6.0-py39h9ed2024_0
  ld64-609-hd2e7500_2
  ld64_osx-64-609-h2487922_2
  ldid-2.1.2-h6a69015_3
  libaec-1.0.4-hb1e8313_1
  libarchive-3.4.2-haa3ed63_0
  libcurl-7.78.0-hb8e4fae_0
  libev-4.33-h9ed2024_1
  libgfortran-3.0.1-h93005f0_2
  liblief-0.10.1-h23ab428_1
  libllvm11-11.1.0-h9b2ccf5_0
  libnghttp2-1.41.0-h7580e61_2
  libspatialindex-1.9.3-h23ab428_0
  libssh2-1.9.0-ha12b0ac_1
  libuv-1.40.0-haf1e3a3_0
  libzopfli-1.0.3-hb1e8313_0
  llvmlite-0.37.0-py39he4411ff_1
  locket-0.2.1-py39hecd8cb5_1
  lxml-4.6.3-py39h26b266a_0
  lzo-2.10-haf1e3a3_2
  matplotlib-3.4.3-py39hecd8cb5_0
  matplotlib-base-3.4.3-py39h0a11d32_0
  mccabe-0.6.1-py39hecd8cb5_1
  mkl-2021.4.0-hecd8cb5_637
  mkl-service-2.4.0-py39h9ed2024_0
  mkl_fft-1.3.1-py39h4ab4a9b_0
  mkl_random-1.2.2-py39hb2f4e1b_0
  mock-4.0.3-pyhd3eb1b0_0
  more-itertools-8.10.0-pyhd3eb1b0_0
  mpc-1.1.0-h6ef4df4_1
  mpfr-4.0.2-h9066e36_1
  mpi-1.0-mpich
  mpich-3.3.2-hc856adb_0
  mpl-scatter-density-0.7-py_0
  mpmath-1.2.1-py39hecd8cb5_0
  msgpack-python-1.0.2-py39hf7b0b51_1
  multipledispatch-0.6.0-py39hecd8cb5_0
  munkres-1.1.4-py_0
  mypy_extensions-0.4.3-py39hecd8cb5_0
  networkx-2.6.3-pyhd3eb1b0_0
  nltk-3.6.5-pyhd3eb1b0_0
  nose-1.3.7-pyhd3eb1b0_1006
  numba-0.54.1-py39hae1ba45_0
  numexpr-2.7.3-py39h5873af2_1
  numpy-1.20.3-py39h4b4dc7a_0
  numpy-base-1.20.3-py39he0bd621_0
  numpydoc-1.1.0-pyhd3eb1b0_1
  olefile-0.46-pyhd3eb1b0_0
  openjpeg-2.4.0-h66ea3da_0
  openpyxl-3.0.9-pyhd3eb1b0_0
  pandas-1.3.4-py39h743cdd8_0
  partd-1.2.0-pyhd3eb1b0_0
  patch-2.7.6-hbcf498f_1002
  path-16.0.0-py39hecd8cb5_0
  path.py-12.5.0-hd3eb1b0_0
  pathlib2-2.3.6-py39hecd8cb5_2
  pathspec-0.7.0-py_0
  patsy-0.5.2-py39hecd8cb5_0
  pep8-1.7.1-py39hecd8cb5_0
  pkginfo-1.7.1-py39hecd8cb5_0
  plotly-5.9.0-py39hecd8cb5_0
  pluggy-0.13.1-py39hecd8cb5_0
  poyo-0.5.0-pyhd3eb1b0_0
  prompt_toolkit-3.0.20-hd3eb1b0_0
  py-1.10.0-pyhd3eb1b0_0
  py-lief-0.10.1-py39h23ab428_1
  pycodestyle-2.7.0-pyhd3eb1b0_0
  pycurl-7.44.1-py39hbcfaee0_1
  pydocstyle-6.1.1-pyhd3eb1b0_0
  pyerfa-2.0.0-py39h9ed2024_0
  pyflakes-2.3.1-pyhd3eb1b0_0
  pylint-2.9.6-py39hecd8cb5_1
  pyls-spyder-0.4.0-pyhd3eb1b0_0
  pyodbc-4.0.31-py39h23ab428_0
  pyopengl-3.1.1a1-py39hecd8cb5_0
  pytables-3.6.1-py39h648f197_1
  pytest-6.2.4-py39hecd8cb5_2
  python-libarchive-c-2.9-pyhd3eb1b0_1
  python-lsp-black-1.0.0-pyhd3eb1b0_0
  python-lsp-jsonrpc-1.0.0-pyhd3eb1b0_0
  python-lsp-server-1.2.4-pyhd3eb1b0_0
  python-slugify-5.0.2-pyhd3eb1b0_0
  pywavelets-1.1.1-py39he3068b8_4
  qdarkstyle-3.0.2-pyhd3eb1b0_0
  qstylizer-0.1.10-pyhd3eb1b0_0
  qt-5.9.7-h468cd18_1
  qtawesome-1.0.2-pyhd3eb1b0_0
  qtconsole-5.1.1-pyhd3eb1b0_0
  regex-2021.8.3-py39h9ed2024_0
  ripgrep-12.1.1-0
  rope-0.19.0-pyhd3eb1b0_0
  rtree-0.9.7-py39hecd8cb5_1
  scikit-image-0.18.3-py39hae1ba45_0
  scikit-learn-0.24.2-py39hb2f4e1b_0
  scikit-learn-intelex-2021.3.0-py39hecd8cb5_0
  scipy-1.7.1-py39h88652d9_2
  seaborn-0.11.2-pyhd3eb1b0_0
  simplegeneric-0.8.1-py39hecd8cb5_2
  singledispatch-3.7.0-pyhd3eb1b0_1001
  snappy-1.1.8-hb1e8313_0
  snowballstemmer-2.1.0-pyhd3eb1b0_0
  sortedcollections-2.1.0-pyhd3eb1b0_0
  sortedcontainers-2.4.0-pyhd3eb1b0_0
  sphinx-4.2.0-pyhd3eb1b0_1
  sphinxcontrib-1.0-py39hecd8cb5_1
  sphinxcontrib-applehelp-1.0.2-pyhd3eb1b0_0
  sphinxcontrib-devhelp-1.0.2-pyhd3eb1b0_0
  sphinxcontrib-htmlhelp-2.0.0-pyhd3eb1b0_0
  sphinxcontrib-jsmath-1.0.1-pyhd3eb1b0_0
  sphinxcontrib-qthelp-1.0.3-pyhd3eb1b0_0
  sphinxcontrib-serializinghtml-1.1.5-pyhd3eb1b0_0
  sphinxcontrib-websupport-1.2.4-py_0
  spyder-5.1.5-py39hecd8cb5_1
  spyder-kernels-2.1.3-py39hecd8cb5_0
  sqlalchemy-1.4.22-py39h9ed2024_0
  statsmodels-0.12.2-py39h9ed2024_0
  sympy-1.9-py39hecd8cb5_0
  tapi-1100.0.11-h0025ef7_0
  tbb-2021.4.0-haf03e11_0
  tbb4py-2021.4.0-py39haf03e11_0
  tblib-1.7.0-pyhd3eb1b0_0
  tenacity-8.0.1-py39hecd8cb5_1
  text-unidecode-1.3-pyhd3eb1b0_0
  textdistance-4.2.1-pyhd3eb1b0_0
  threadpoolctl-2.2.0-pyh0d69192_0
  three-merge-0.1.1-pyhd3eb1b0_0
  tifffile-2021.7.2-pyhd3eb1b0_2
  tinycss-0.4-pyhd3eb1b0_1002
  typed-ast-1.4.3-py39h9ed2024_1
  unicodecsv-0.14.1-py39hecd8cb5_0
  unidecode-1.2.0-pyhd3eb1b0_0
  unixodbc-2.3.9-haf1e3a3_0
  watchdog-2.1.3-py39hd5f6b7e_0
  werkzeug-2.0.2-pyhd3eb1b0_0
  whichcraft-0.6.1-pyhd3eb1b0_0
  wrapt-1.12.1-py39h9ed2024_1
  wurlitzer-2.1.1-py39hecd8cb5_0
  xlrd-2.0.1-pyhd3eb1b0_0
  xlsxwriter-3.0.1-pyhd3eb1b0_0
  xlwings-0.24.9-py39hecd8cb5_0
  xlwt-1.3.0-py39hecd8cb5_0
  yapf-0.31.0-pyhd3eb1b0_0
  zfp-0.5.5-h23ab428_6
  zict-2.0.0-pyhd3eb1b0_0
  zipp-3.6.0-pyhd3eb1b0_0
  zope-1.0-py39hecd8cb5_1
  zope.event-4.5.0-py39hecd8cb5_0
  zope.interface-5.4.0-py39h9ed2024_0

The following packages will be UPDATED:

  anaconda-client                      1.9.0-py39hecd8cb5_0 --> 1.10.0-py39hecd8cb5_0
  anyio                                2.2.0-py39hecd8cb5_1 --> 3.5.0-py39hecd8cb5_0
  argon2-cffi        pkgs/main/osx-64::argon2-cffi-20.1.0-~ --> pkgs/main/noarch::argon2-cffi-21.3.0-pyhd3eb1b0_0
  attrs                                 21.2.0-pyhd3eb1b0_0 --> 21.4.0-pyhd3eb1b0_0
  backports                                1.0-pyhd3eb1b0_2 --> 1.1-pyhd3eb1b0_0
  bleach                                 4.0.0-pyhd3eb1b0_0 --> 4.1.0-pyhd3eb1b0_0
  ca-certificates    anaconda::ca-certificates-2021.10.26-~ --> pkgs/main::ca-certificates-2022.07.19-hecd8cb5_0
  certifi            anaconda::certifi-2021.10.8-py39hecd8~ --> pkgs/main::certifi-2022.6.15-py39hecd8cb5_0
  cffi                                1.14.6-py39h2125817_0 --> 1.15.1-py39hc55c11b_0
  conda-content-tru~ pkgs/main/noarch::conda-content-trust~ --> pkgs/main/osx-64::conda-content-trust-0.1.3-py39hecd8cb5_0
  cryptography                         3.4.8-py39h2fd3fbb_0 --> 37.0.1-py39hf6deb26_0
  debugpy                              1.4.1-py39h23ab428_0 --> 1.5.1-py39he9d5cce_0
  decorator                              5.1.0-pyhd3eb1b0_0 --> 5.1.1-pyhd3eb1b0_0
  entrypoints                            0.3-py39hecd8cb5_0 --> 0.4-py39hecd8cb5_0
  freetype                                2.10.4-ha233b18_0 --> 2.11.0-hd8bbffd_0
  idna                                     3.2-pyhd3eb1b0_0 --> 3.3-pyhd3eb1b0_0
  ipykernel                            6.4.1-py39hecd8cb5_1 --> 6.9.1-py39hecd8cb5_0
  ipython                             7.29.0-py39h01d92e1_0 --> 8.4.0-py39hecd8cb5_0
  jedi                                0.18.0-py39hecd8cb5_1 --> 0.18.1-py39hecd8cb5_1
  jinja2                                2.11.3-pyhd3eb1b0_0 --> 3.0.3-pyhd3eb1b0_0
  jpeg                                        9d-h9ed2024_0 --> 9e-hca72f7f_0
  jsonschema         pkgs/main/noarch::jsonschema-3.2.0-py~ --> pkgs/main/osx-64::jsonschema-4.4.0-py39hecd8cb5_0
  jupyter_client     pkgs/main/noarch::jupyter_client-6.1.~ --> pkgs/main/osx-64::jupyter_client-7.3.4-py39hecd8cb5_0
  jupyter_core                         4.8.1-py39hecd8cb5_0 --> 4.10.0-py39hecd8cb5_0
  jupyter_server     pkgs/main/osx-64::jupyter_server-1.4.~ --> pkgs/main/noarch::jupyter_server-1.13.5-pyhd3eb1b0_0
  jupyterlab                             3.2.1-pyhd3eb1b0_1 --> 3.3.2-pyhd3eb1b0_0
  jupyterlab_server  pkgs/main/noarch::jupyterlab_server-2~ --> pkgs/main/osx-64::jupyterlab_server-2.12.0-py39hecd8cb5_0
  libiconv                                  1.16-h1de35cc_0 --> 1.16-hca72f7f_2
  libtiff                                  4.2.0-h87d7836_0 --> 4.4.0-h2ef1027_0
  libwebp                                  1.2.0-hacca55c_0 --> 1.2.2-h56c3ce4_0
  libwebp-base                             1.2.0-h9ed2024_0 --> 1.2.2-hca72f7f_0
  libxml2                                 2.9.12-hcdb78fc_0 --> 2.9.14-hbf8cd5e_0
  libxslt                                 1.1.34-h83b36ba_0 --> 1.1.35-h5b33f42_0
  markupsafe                           1.1.1-py39h9ed2024_0 --> 2.1.1-py39hca72f7f_0
  matplotlib-inline  pkgs/main/noarch::matplotlib-inline-0~ --> pkgs/main/osx-64::matplotlib-inline-0.1.6-py39hecd8cb5_0
  nbclassic                              0.2.6-pyhd3eb1b0_0 --> 0.3.5-pyhd3eb1b0_0
  nbclient           pkgs/main/noarch::nbclient-0.5.3-pyhd~ --> pkgs/main/osx-64::nbclient-0.5.13-py39hecd8cb5_0
  nbconvert                            6.1.0-py39hecd8cb5_0 --> 6.3.0-py39hecd8cb5_0
  nbformat           pkgs/main/noarch::nbformat-5.1.3-pyhd~ --> pkgs/main/osx-64::nbformat-5.3.0-py39hecd8cb5_0
  ncurses                                    6.3-hca72f7f_1 --> 6.3-hca72f7f_3
  nest-asyncio       pkgs/main/noarch::nest-asyncio-1.5.1-~ --> pkgs/main/osx-64::nest-asyncio-1.5.5-py39hecd8cb5_0
  notebook                             6.4.5-py39hecd8cb5_0 --> 6.4.12-py39hecd8cb5_0
  openssl               anaconda::openssl-1.1.1l-h9ed2024_0 --> pkgs/main::openssl-1.1.1q-hca72f7f_0
  packaging                               21.0-pyhd3eb1b0_0 --> 21.3-pyhd3eb1b0_0
  pandocfilters      pkgs/main/osx-64::pandocfilters-1.4.3~ --> pkgs/main/noarch::pandocfilters-1.5.0-pyhd3eb1b0_0
  parso                                  0.8.2-pyhd3eb1b0_0 --> 0.8.3-pyhd3eb1b0_0
  pillow                               8.4.0-py39h98e4679_0 --> 9.2.0-py39hde71d04_1
  pip                                 21.2.4-py39hecd8cb5_0 --> 22.1.2-py39hecd8cb5_0
  prometheus_client  pkgs/main/noarch::prometheus_client-0~ --> pkgs/main/osx-64::prometheus_client-0.14.1-py39hecd8cb5_0
  psutil                               5.8.0-py39h9ed2024_1 --> 5.9.0-py39hca72f7f_0
  pycparser                                       2.20-py_2 --> 2.21-pyhd3eb1b0_0
  pygments                              2.10.0-pyhd3eb1b0_0 --> 2.11.2-pyhd3eb1b0_0
  pyopenssl                             21.0.0-pyhd3eb1b0_1 --> 22.0.0-pyhd3eb1b0_0
  pyparsing          pkgs/main/noarch::pyparsing-3.0.4-pyh~ --> pkgs/main/osx-64::pyparsing-3.0.9-py39hecd8cb5_0
  pyqt                                 5.9.2-py39h23ab428_6 --> 5.15.7-py39he9d5cce_0
  pytz               pkgs/main/noarch::pytz-2021.3-pyhd3eb~ --> pkgs/main/osx-64::pytz-2022.1-py39hecd8cb5_0
  pyzmq                               22.2.1-py39h23ab428_1 --> 23.2.0-py39he9d5cce_0
  qtpy               pkgs/main/noarch::qtpy-1.10.0-pyhd3eb~ --> pkgs/main/osx-64::qtpy-2.2.0-py39hecd8cb5_0
  readline                                   8.1-h9ed2024_0 --> 8.1.2-hca72f7f_1
  requests           pkgs/main/noarch::requests-2.26.0-pyh~ --> pkgs/main/osx-64::requests-2.28.1-py39hecd8cb5_0
  setuptools                          58.0.4-py39hecd8cb5_0 --> 63.4.1-py39hecd8cb5_0
  sip                                4.19.13-py39h23ab428_0 --> 6.6.2-py39he9d5cce_0
  six                                   1.16.0-pyhd3eb1b0_0 --> 1.16.0-pyhd3eb1b0_1
  soupsieve                              2.2.1-pyhd3eb1b0_0 --> 2.3.1-pyhd3eb1b0_0
  sqlite                                  3.36.0-hce871da_0 --> 3.39.2-h707629a_0
  terminado                            0.9.4-py39hecd8cb5_0 --> 0.13.1-py39hecd8cb5_0
  testpath           pkgs/main/noarch::testpath-0.5.0-pyhd~ --> pkgs/main/osx-64::testpath-0.6.0-py39hecd8cb5_0
  tk                                      8.6.11-h7bc2e8c_0 --> 8.6.12-h5d9f67b_0
  toolz                                 0.11.1-pyhd3eb1b0_0 --> 0.11.2-pyhd3eb1b0_0
  tqdm               pkgs/main/noarch::tqdm-4.62.3-pyhd3eb~ --> pkgs/main/osx-64::tqdm-4.64.0-py39hecd8cb5_0
  traitlets                              5.1.0-pyhd3eb1b0_0 --> 5.1.1-pyhd3eb1b0_0
  typing-extensions  pkgs/main/noarch::typing-extensions-3~ --> pkgs/main/osx-64::typing-extensions-4.3.0-py39hecd8cb5_0
  typing_extensions  pkgs/main/noarch::typing_extensions-3~ --> pkgs/main/osx-64::typing_extensions-4.3.0-py39hecd8cb5_0
  tzdata                                   2021e-hda174b7_0 --> 2022a-hda174b7_0
  ujson                                4.0.2-py39h23ab428_0 --> 5.4.0-py39he9d5cce_0
  urllib3            pkgs/main/noarch::urllib3-1.26.7-pyhd~ --> pkgs/main/osx-64::urllib3-1.26.11-py39hecd8cb5_0
  wheel                                 0.37.0-pyhd3eb1b0_1 --> 0.37.1-pyhd3eb1b0_0
  widgetsnbextension                   3.5.1-py39hecd8cb5_0 --> 3.5.2-py39hecd8cb5_0
  xz                                       5.2.5-h1de35cc_0 --> 5.2.5-hca72f7f_1
  zlib                                    1.2.11-h1de35cc_3 --> 1.2.12-h4dc903c_2
  zstd                                     1.4.9-h322a384_0 --> 1.5.2-hcb37349_0


Proceed ([y]/n)? y


Downloading and Extracting Packages
prometheus_client-0. | 90 KB     | ################################################################################################################################################################# | 100% 
anaconda-client-1.10 | 149 KB    | ################################################################################################################################################################# | 100% 
python-fastjsonschem | 231 KB    | ################################################################################################################################################################# | 100% 
nss-3.74             | 1.8 MB    | ################################################################################################################################################################# | 100% 
backports-1.1        | 4 KB      | ################################################################################################################################################################# | 100% 
qt-main-5.15.2       | 38.0 MB   | ################################################################################################################################################################# | 100% 
qtwebkit-5.212       | 9.8 MB    | ################################################################################################################################################################# | 100% 
psutil-5.9.0         | 339 KB    | ################################################################################################################################################################# | 100% 
typing-extensions-4. | 9 KB      | ################################################################################################################################################################# | 100% 
qt-webengine-5.15.9  | 48.2 MB   | ################################################################################################################################################################# | 100% 
typing_extensions-4. | 42 KB     | ################################################################################################################################################################# | 100% 
urllib3-1.26.11      | 185 KB    | ################################################################################################################################################################# | 100% 
tqdm-4.64.0          | 126 KB    | ################################################################################################################################################################# | 100% 
libwebp-base-1.2.2   | 393 KB    | ################################################################################################################################################################# | 100% 
pyparsing-3.0.9      | 149 KB    | ################################################################################################################################################################# | 100% 
gstreamer-1.14.0     | 1.1 MB    | ################################################################################################################################################################# | 100% 
cffi-1.15.1          | 219 KB    | ################################################################################################################################################################# | 100% 
glib-2.69.1          | 2.7 MB    | ################################################################################################################################################################# | 100% 
qtpy-2.2.0           | 86 KB     | ################################################################################################################################################################# | 100% 
sip-6.6.2            | 417 KB    | ################################################################################################################################################################# | 100% 
libclang-12.0.0      | 6.1 MB    | ################################################################################################################################################################# | 100% 
conda-content-trust- | 71 KB     | ################################################################################################################################################################# | 100% 
matplotlib-inline-0. | 17 KB     | ################################################################################################################################################################# | 100% 
jupyter_client-7.3.4 | 194 KB    | ################################################################################################################################################################# | 100% 
pcre-8.45            | 181 KB    | ################################################################################################################################################################# | 100% 
nspr-4.33            | 228 KB    | ################################################################################################################################################################# | 100% 
nbconvert-6.3.0      | 484 KB    | ################################################################################################################################################################# | 100% 
notebook-6.4.12      | 4.2 MB    | ################################################################################################################################################################# | 100% 
pyqt5-sip-12.11.0    | 73 KB     | ################################################################################################################################################################# | 100% 
pyqt-5.15.7          | 3.9 MB    | ################################################################################################################################################################# | 100% 
libpq-12.9           | 2.0 MB    | ################################################################################################################################################################# | 100% 
gst-plugins-base-1.1 | 1.5 MB    | ################################################################################################################################################################# | 100% 
ujson-5.4.0          | 48 KB     | ################################################################################################################################################################# | 100% 
pillow-9.2.0         | 624 KB    | ################################################################################################################################################################# | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(base) gregjennings@Gregs-MacBook-Pro packages-clustering % conda install -n base conda-libmamba-solver
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/gregjennings/opt/anaconda3

  added / updated specs:
    - conda-libmamba-solver


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    conda-libmamba-solver-22.8.1|   py39hecd8cb5_0          63 KB
    importlib-metadata-4.11.3  |   py39hecd8cb5_0          40 KB
    libarchive-3.5.2           |       ha0e9c3a_0         713 KB
    libmamba-0.24.0            |       hf1b0957_0         1.0 MB
    libmambapy-0.24.0          |   py39haf03e11_0         198 KB
    libsolv-0.7.20             |       h8346a28_0         401 KB
    reproc-14.2.4              |       he9d5cce_1          27 KB
    reproc-cpp-14.2.4          |       he9d5cce_1          19 KB
    yaml-cpp-0.7.0             |       he9d5cce_1         442 KB
    zipp-3.8.0                 |   py39hecd8cb5_0          16 KB
    ------------------------------------------------------------
                                           Total:         2.9 MB

The following NEW packages will be INSTALLED:

  bzip2              pkgs/main/osx-64::bzip2-1.0.8-h1de35cc_0
  c-ares             pkgs/main/osx-64::c-ares-1.18.1-hca72f7f_0
  conda-libmamba-so~ pkgs/main/osx-64::conda-libmamba-solver-22.8.1-py39hecd8cb5_0
  importlib-metadata pkgs/main/osx-64::importlib-metadata-4.11.3-py39hecd8cb5_0
  importlib_metadata pkgs/main/noarch::importlib_metadata-4.11.3-hd3eb1b0_0
  libarchive         pkgs/main/osx-64::libarchive-3.5.2-ha0e9c3a_0
  libcurl            pkgs/main/osx-64::libcurl-7.84.0-h6dfd666_0
  libev              pkgs/main/osx-64::libev-4.33-h9ed2024_1
  libmamba           pkgs/main/osx-64::libmamba-0.24.0-hf1b0957_0
  libmambapy         pkgs/main/osx-64::libmambapy-0.24.0-py39haf03e11_0
  libnghttp2         pkgs/main/osx-64::libnghttp2-1.46.0-ha29bfda_0
  libsolv            pkgs/main/osx-64::libsolv-0.7.20-h8346a28_0
  libssh2            pkgs/main/osx-64::libssh2-1.10.0-h0a4fc7d_0
  reproc             pkgs/main/osx-64::reproc-14.2.4-he9d5cce_1
  reproc-cpp         pkgs/main/osx-64::reproc-cpp-14.2.4-he9d5cce_1
  yaml-cpp           pkgs/main/osx-64::yaml-cpp-0.7.0-he9d5cce_1
  zipp               pkgs/main/osx-64::zipp-3.8.0-py39hecd8cb5_0


Proceed ([y]/n)? y


Downloading and Extracting Packages
reproc-14.2.4        | 27 KB     | ################################################################################################################################################################# | 100% 
libsolv-0.7.20       | 401 KB    | ################################################################################################################################################################# | 100% 
conda-libmamba-solve | 63 KB     | ################################################################################################################################################################# | 100% 
libmambapy-0.24.0    | 198 KB    | ################################################################################################################################################################# | 100% 
yaml-cpp-0.7.0       | 442 KB    | ################################################################################################################################################################# | 100% 
importlib-metadata-4 | 40 KB     | ################################################################################################################################################################# | 100% 
zipp-3.8.0           | 16 KB     | ################################################################################################################################################################# | 100% 
reproc-cpp-14.2.4    | 19 KB     | ################################################################################################################################################################# | 100% 
libmamba-0.24.0      | 1.0 MB    | ################################################################################################################################################################# | 100% 
libarchive-3.5.2     | 713 KB    | ################################################################################################################################################################# | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Retrieving notices: ...working... done
(base) gregjennings@Gregs-MacBook-Pro packages-clustering %```
@gmjen gmjen added solver::libmamba pertains to the libmamba solver tag::experimental related to an experimental feature labels Sep 1, 2022
@jaimergp
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bzip2 (or a dependency) might have been holding back some updates, but removing it allowed the environment to "move on". This looks like "the base environment is too packed", but not a problem with the libmamba solver itself.

Just to make sure, you can use conda normally after this install, right? Both with the classic and the libmamba solver.

Ah, and thanks for documenting the fix in case someone else runs into it!

@jaimergp jaimergp added type::support neither a bug nor feature, is really just a user having questions or difficulty somewhere solver::behavior pertains to the solver's behavior pending::feedback indicates we are waiting on feedback from the user and removed solver::libmamba pertains to the libmamba solver tag::experimental related to an experimental feature labels Sep 14, 2022
@github-actions
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github-actions bot commented Oct 6, 2022

Hi there, thank you for your contribution!

This issue has been automatically marked as stale because it has not had recent activity. It will be closed automatically if no further activity occurs.

If you would like this issue to remain open please:

  1. Verify that you can still reproduce the issue at hand
  2. Comment that the issue is still reproducible and include:
    - What OS and version you reproduced the issue on
    - What steps you followed to reproduce the issue

NOTE: If this issue was closed prematurely, please leave a comment.

Thanks!

@github-actions github-actions bot added the stale [bot] marked as stale due to inactivity label Oct 6, 2022
@github-actions github-actions bot added the stale::closed [bot] closed after being marked as stale label Oct 13, 2022
@github-actions github-actions bot added the locked [bot] locked due to inactivity label Oct 13, 2023
@github-actions github-actions bot locked as resolved and limited conversation to collaborators Oct 13, 2023
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backlog issue has been triaged but has not been earmarked for any upcoming release locked [bot] locked due to inactivity pending::feedback indicates we are waiting on feedback from the user solver::behavior pertains to the solver's behavior stale::closed [bot] closed after being marked as stale stale [bot] marked as stale due to inactivity type::support neither a bug nor feature, is really just a user having questions or difficulty somewhere
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